RNA id: TU326409


Basic Information

Item Value
RNA id TU326409
length 411
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G275408
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1386552 ~ 1433883 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagggaccatgtgactgagacacgccaccaaaggccttttctcaggaaattacacttttttaaatgcaaaaaatgattttattttacttccaaaaatgtcacattttctgaactgtgttcattttccccctagttattagcaaatagagtagggagagttaaatcacctttcatattacctaatgcaatgtctccaccttttcttttacaacactttttatttcttaaaacatcacttgtttattaattttttaaaaaagacacaaattacCTTTATGTTCAATGCTATTCTTTTAGCTATAAACCATAGTTGAACTGGATTAGAGAATTCTGTTCTGCCCATTATCTGGTCATGGTGTATAGCCGCCACCTAGTGGCCATtttcaatattgcagttttgttattcttcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326381 lncRNA downstream 96156 1097145 ~ 1313535 (-) True G275382
XR_004579911.1 lncRNA downstream 115715 1292165 ~ 1293976 (-) True LOC117599498
XR_004579887.1 lncRNA downstream 146981 1261642 ~ 1262710 (-) True LOC117599476
XR_004579888.1 lncRNA downstream 146981 1261646 ~ 1262710 (-) False LOC117599476
XR_004579945.1 lncRNA downstream 167787 1241367 ~ 1241904 (-) True LOC117599532
TU326420 lncRNA upstream 7356 1441239 ~ 1458199 (-) True G275416
TU326421 lncRNA upstream 15199 1449082 ~ 1451564 (-) False LOC117599503
XR_004579916.1 lncRNA upstream 15647 1449530 ~ 1451712 (-) True LOC117599503
TU326423 lncRNA upstream 26040 1459923 ~ 1573322 (-) True G275419
TU326444 lncRNA upstream 153887 1587770 ~ 1627055 (-) True LOC117599486
XM_034312971.1 mRNA downstream 13747 1391900 ~ 1395944 (-) True LOC117599431
XM_034312970.1 mRNA downstream 33372 1366111 ~ 1376319 (-) True LOC117599430
XM_034312968.1 mRNA downstream 111792 1263749 ~ 1297899 (-) True LOC117599428
XM_034312967.1 mRNA downstream 154505 1242138 ~ 1255186 (-) True LOC117599427
XM_034313122.1 mRNA downstream 232457 1175310 ~ 1177234 (-) True LOC117599470
XM_034312975.1 mRNA upstream 937741 2371624 ~ 2373304 (-) True LOC117599435
XM_034312976.1 mRNA upstream 978659 2412542 ~ 2415193 (-) True LOC117599436
XM_034313123.1 mRNA upstream 1048500 2482383 ~ 2548694 (-) True LOC117599471
XM_034312978.1 mRNA upstream 1194782 2628665 ~ 2630328 (-) True LOC117599438
XM_034312980.1 mRNA upstream 1230514 2664397 ~ 2667515 (-) True LOC117599439
XR_004579909.1 other downstream 21013 1388196 ~ 1388678 (-) True LOC117599496
TU326402 other downstream 114314 1294140 ~ 1295377 (-) False LOC117599428
XR_004579908.1 other downstream 126757 1282454 ~ 1282934 (-) True LOC117599495
XR_004579907.1 other downstream 277122 1132088 ~ 1132569 (-) True LOC117599494
XR_004579897.1 other downstream 539216 869990 ~ 870475 (-) True LOC117599484
TU326424 other upstream 31976 1465859 ~ 1577516 (-) True G275420
XR_004580038.1 other upstream 62179 1496062 ~ 1496168 (-) True LOC117599633
XR_004579898.1 other upstream 155430 1589313 ~ 1589798 (-) True LOC117599485
XR_004579899.1 other upstream 192896 1626779 ~ 1627263 (-) False LOC117599486
XR_004579917.1 other upstream 253325 1687208 ~ 1687679 (-) True LOC117599504

Expression Profile