RNA id: TU326444


Basic Information

Item Value
RNA id TU326444
length 523
lncRNA type inter_gene
GC content 0.37
exon number 6
gene id LOC117599486
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1587770 ~ 1627263 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagctgagaattatgatgacgccattacagctgatcagaagtcagttatactgacagaggacgtgtccgagaactatgatgatgcagttaccatggaaacaaacccaaacatcatcacagtagacagtccagaagattatgatgatgtcatcactgaggaacaggatgtaggagagacagaagaatatgatgatgtggaggagaaatctcagaaagacagggaccatgtgactgagacacgccaccaaaggccttttctcaggaaattacacttttttaaatgcaaaaaatgattttattttacttccaaaatgtcatgttttctgaactgtgttcattttccccctagttattagcaaatagagtagggagagttaaatcacctttcatattacctaatgcaatgtctccagcttttcttttacaacactttttatttcttaaaacatcacttgtttattaattttttttttaaaaaaagacacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326423 lncRNA downstream 14448 1459923 ~ 1573322 (-) True G275419
TU326366 lncRNA downstream 125714 1396439 ~ 1462056 (-) True G275369
TU326420 lncRNA downstream 129571 1441239 ~ 1458199 (-) True G275416
TU326415 lncRNA downstream 133564 1413392 ~ 1454206 (-) True G275412
XR_004579916.1 lncRNA downstream 136058 1449530 ~ 1451712 (-) True LOC117599503
XR_004579937.1 lncRNA upstream 1968 1629023 ~ 1629581 (-) True LOC117599524
XR_004579936.1 lncRNA upstream 4684 1631739 ~ 1632322 (-) True LOC117599523
XR_004579912.1 lncRNA upstream 64252 1691307 ~ 1692174 (-) True LOC117599499
XR_004579913.1 lncRNA upstream 87837 1714892 ~ 1715739 (-) True LOC117599500
XR_004579891.1 lncRNA upstream 199761 1826816 ~ 1832783 (-) True LOC117599478
XM_034312972.1 mRNA downstream 162119 1415905 ~ 1425651 (-) True LOC117599432
XM_034312971.1 mRNA downstream 191826 1391900 ~ 1395944 (-) True LOC117599431
XM_034312970.1 mRNA downstream 211451 1366111 ~ 1376319 (-) True LOC117599430
XM_034312968.1 mRNA downstream 289871 1263749 ~ 1297899 (-) True LOC117599428
XM_034312967.1 mRNA downstream 332584 1242138 ~ 1255186 (-) True LOC117599427
XM_034312975.1 mRNA upstream 744569 2371624 ~ 2373304 (-) True LOC117599435
XM_034312976.1 mRNA upstream 785487 2412542 ~ 2415193 (-) True LOC117599436
XM_034313123.1 mRNA upstream 855328 2482383 ~ 2548694 (-) True LOC117599471
XM_034312978.1 mRNA upstream 1001610 2628665 ~ 2630328 (-) True LOC117599438
XM_034312980.1 mRNA upstream 1037342 2664397 ~ 2667515 (-) True LOC117599439
TU326424 other downstream 10254 1465859 ~ 1577516 (-) True G275420
XR_004580038.1 other downstream 91602 1496062 ~ 1496168 (-) True LOC117599633
XR_004579902.1 other downstream 176155 1411131 ~ 1411615 (-) True LOC117599489
XR_004579909.1 other downstream 199092 1388196 ~ 1388678 (-) True LOC117599496
TU326402 other downstream 292393 1294140 ~ 1295377 (-) False LOC117599428
XR_004579917.1 other upstream 60153 1687208 ~ 1687679 (-) True LOC117599504
XR_004579919.1 other upstream 299278 1926333 ~ 1927161 (-) True LOC117599506
XR_004580035.1 other upstream 390004 2017059 ~ 2017165 (-) True LOC117599628
TU326484 other upstream 411180 2038235 ~ 2040062 (-) True G275475
XR_004579900.1 other upstream 426643 2053698 ~ 2054182 (-) True LOC117599487

Expression Profile