Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579885.1 |
| length | 292 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 5 |
| gene id | LOC117599475 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 2377505 ~ 2410104 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579922.1 | lncRNA | downstream | 25578 | 2381342 ~ 2383458 (-) | True | LOC117599509 |
| TU326518 | lncRNA | downstream | 136536 | 2272002 ~ 2272500 (-) | True | G275504 |
| TU326514 | lncRNA | downstream | 171923 | 2236032 ~ 2237113 (-) | True | G275501 |
| TU326513 | lncRNA | downstream | 176290 | 2231438 ~ 2232746 (-) | True | G275500 |
| TU326501 | lncRNA | downstream | 292565 | 2115209 ~ 2116471 (-) | True | G275488 |
| TU326537 | lncRNA | upstream | 26531 | 2436635 ~ 2437067 (-) | True | G275520 |
| XR_004579931.1 | lncRNA | upstream | 47537 | 2457641 ~ 2458841 (-) | True | LOC117599518 |
| XR_004579927.1 | lncRNA | upstream | 48957 | 2459061 ~ 2460112 (-) | True | LOC117599514 |
| TU326540 | lncRNA | upstream | 104640 | 2514744 ~ 2549652 (-) | True | G275523 |
| TU326541 | lncRNA | upstream | 125340 | 2535444 ~ 2569264 (-) | True | G275524 |
| XM_034312975.1 | mRNA | downstream | 35732 | 2371624 ~ 2373304 (-) | True | LOC117599435 |
| XM_034312972.1 | mRNA | downstream | 983385 | 1415905 ~ 1425651 (-) | True | LOC117599432 |
| XM_034312971.1 | mRNA | downstream | 1013092 | 1391900 ~ 1395944 (-) | True | LOC117599431 |
| XM_034312970.1 | mRNA | downstream | 1032717 | 1366111 ~ 1376319 (-) | True | LOC117599430 |
| XM_034312968.1 | mRNA | downstream | 1111137 | 1263749 ~ 1297899 (-) | True | LOC117599428 |
| XM_034312976.1 | mRNA | upstream | 2438 | 2412542 ~ 2415193 (-) | True | LOC117599436 |
| XM_034313123.1 | mRNA | upstream | 72279 | 2482383 ~ 2548694 (-) | True | LOC117599471 |
| XM_034312978.1 | mRNA | upstream | 218561 | 2628665 ~ 2630328 (-) | True | LOC117599438 |
| XM_034312980.1 | mRNA | upstream | 254293 | 2664397 ~ 2667515 (-) | True | LOC117599439 |
| XM_034312981.1 | mRNA | upstream | 258251 | 2668355 ~ 2669336 (-) | True | LOC117599440 |
| XR_004579940.1 | other | downstream | 27702 | 2379889 ~ 2381334 (-) | True | LOC117599527 |
| XR_004579921.1 | other | downstream | 180091 | 2228117 ~ 2228945 (-) | True | LOC117599508 |
| TU326496 | other | downstream | 297088 | 2089064 ~ 2111948 (-) | True | G275484 |
| TU326497 | other | downstream | 297088 | 2089064 ~ 2111948 (-) | False | G275484 |
| XR_004579920.1 | other | downstream | 328259 | 2079950 ~ 2080777 (-) | True | LOC117599507 |
| XR_004579944.1 | other | upstream | 18404 | 2428508 ~ 2428941 (-) | True | LOC117599531 |
| XR_004579918.1 | other | upstream | 44148 | 2454252 ~ 2455081 (-) | True | LOC117599505 |
| XR_004579903.1 | other | upstream | 96483 | 2506587 ~ 2507094 (-) | True | LOC117599490 |
| XR_004579901.1 | other | upstream | 133043 | 2543147 ~ 2543631 (-) | True | LOC117599488 |
| TU327069 | other | upstream | 732430 | 3142534 ~ 3201297 (-) | True | G275981 |
