RNA id: TU326970


Basic Information

Item Value
RNA id TU326970
length 1553
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G275891
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2979837 ~ 2981862 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACAGTGTAACACCACATAACACAGCgtaacacagtgtaacacaACGTAACAGTGTAACACAACATAAGACAGCATAACAGCGTAAGACAGCATAACAGCATAAGACAGCATAACAGCGTAACACAGCGTAACAGTGTAACACCACGTAACACAGCGTAACACAGCGTAACACAACGTAAGACAGCATAACACAGCGTAACACAGCATCAGTTTTGCTCTCCTGGCTTCCAGCCACGCACGGCTGTGACATCATCGAGAGATCGCGAGTTGAAATGCTGACGATGACACAGCCATACGCTATAGAAGAGTATTTTGGAGACATTTTGGTAAATATTTTTCCtcgataaaaaataaaagcagagtgAAAGGAAGCACTTTCGCTTGAAGAAGCACATCACTGGTTTAAAAAACGAAGCAGTCATGCATCACACGGTGTCACGTCTCTCCTTATCACTTTCTATTCTCTGTATTTTCCATGTGGAGGAGCTGAGAAGTGGTTCATTTGACAGTAATAGCGGAAGCGACAGACGGAAATGTATCAAAATAGTCAACAGAAAGAAGAAGCTGAAACGTTTTGCTTTCtgaccatgtgtgtgtttttactaaTACTCCTCCACACGTCACAGTGACAGCCATGAAGACGTGTGTATAAGGCTGTGCTCGCTTTATATCCTACACTATACTGTAGTTTATACACACTTACTCACATGCTAGCACACATTCAGATTGCTGCTTTAATCTGTGATtttccctctgggattaataacactatctatctatctatctatctatctatctatctatctatccatctatctatctatctatctatctaaactgggacattttttaattaaatgattatttcagTTCTCAAAAGAGAACATGTTTCAGTAAAACTACCAGCAGAACAGCGAGTGTCTGATGAGAAACCAGGCCACGCAGAAGATGAGTGTACACTGTGGACACGTGAAAGTTGCTGGAAGTACACCGTGGGACACGTGAAAGTTGCTGGAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGACATGTTGAAGTTGCTGGAAGTACACTGTGGGACACGTGAAAGTTGCTGGAAGTACACTGTGGGACACGTGAAAGTTGTTGAAAGTACACTGTGGACACGTGAAAGTTGTTGAAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACCGTGGGACACATGAAAGTTGCTGAAAGTACACTGTGGACACGTGAAAGTTGCTGGAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGGACACGTGAAAGTTGCTGGAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGTCACGTGAAAGTTGCTGAAAGTACACTGTGGACACGTGAAAGTTGCTGAAAGTACACTGTGGGACACGTGAAAGTTGCTGGAAGTACACTGTGGGACACGTGAAAGTTGCTGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326881 lncRNA downstream 133933 2834700 ~ 2845904 (-) True G275815
TU326553 lncRNA downstream 270458 2632426 ~ 2709379 (-) True G275536
TU326541 lncRNA downstream 410573 2535444 ~ 2569264 (-) True G275524
TU326540 lncRNA downstream 430185 2514744 ~ 2549652 (-) True G275523
XR_004579927.1 lncRNA downstream 519725 2459061 ~ 2460112 (-) True LOC117599514
TU327113 lncRNA upstream 235857 3217719 ~ 3221204 (-) True G276021
TU327114 lncRNA upstream 236327 3218189 ~ 3219050 (-) True G276022
TU327064 lncRNA upstream 244733 3226595 ~ 3282365 (-) False ppp1r12a
TU327068 lncRNA upstream 244733 3226595 ~ 3282365 (-) False ppp1r12a
TU327065 lncRNA upstream 275839 3257701 ~ 3282365 (-) False ppp1r12a
XM_034312982.1 mRNA downstream 301805 2672021 ~ 2678032 (-) True LOC117599441
XM_034312981.1 mRNA downstream 310501 2668355 ~ 2669336 (-) True LOC117599440
XM_034312980.1 mRNA downstream 312322 2664397 ~ 2667515 (-) True LOC117599439
XM_034312978.1 mRNA downstream 349509 2628665 ~ 2630328 (-) True LOC117599438
XM_034313123.1 mRNA downstream 431143 2482383 ~ 2548694 (-) True LOC117599471
XM_034313335.1 mRNA upstream 223426 3205288 ~ 3246996 (-) True pawr
XM_034312985.1 mRNA upstream 277156 3259018 ~ 3335017 (-) True ppp1r12a
XM_034312986.1 mRNA upstream 387818 3369680 ~ 3384923 (-) True rps16
XM_034313336.1 mRNA upstream 448328 3430190 ~ 3494016 (-) False lin7a
XM_034313337.1 mRNA upstream 448328 3430190 ~ 3494013 (-) False lin7a
XR_004579901.1 other downstream 436206 2543147 ~ 2543631 (-) True LOC117599488
XR_004579903.1 other downstream 472743 2506587 ~ 2507094 (-) True LOC117599490
XR_004579918.1 other downstream 524756 2454252 ~ 2455081 (-) True LOC117599505
XR_004579944.1 other downstream 550896 2428508 ~ 2428941 (-) True LOC117599531
XR_004579940.1 other downstream 598503 2379889 ~ 2381334 (-) True LOC117599527
TU327069 other upstream 160672 3142534 ~ 3201297 (-) True G275981
TU327062 other upstream 303975 3285837 ~ 3293790 (-) False ppp1r12a
XR_004579995.1 other upstream 448328 3430190 ~ 3494016 (-) True lin7a
TU327175 other upstream 555135 3536997 ~ 3538743 (-) True G276075
XR_004580002.1 other upstream 583173 3565035 ~ 3571926 (-) True LOC117599595

Expression Profile