RNA id: TU327062


Basic Information

Item Value
RNA id TU327062
length 881
RNA type TUCP
GC content 0.52
exon number 7
gene id ppp1r12a
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3226595 ~ 3335017 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtatagagtatatggattatatagagtatatggatGATACGgattatagagtgtatagagtatatggattatatagagtatatggatGATgatgatgatgatgatctgtTCTCGTGCTCCAGCTGATGAGTGAAAAGAAAGACGCTAAGAAATCTCCTTTGATAGAGACCACCACTACAGCGGATAATAACCAGTCCACTAAACCGGCCGTGAAGAGTAAGGAGACGCTGTTACTAGAGGTGGAGAAGAACGCTCCTCACATCGAGAACCTGGAGTCGGAGAAagctgatgaggaagaggaggggaaGAAGGACGAGTCCAGCTGCTccagtgaggaagaggaggaagacgaCTCAGAGTCTGAGAATGAAGCAgATAAGACCAAATCAGCTGCTCCGGTCAGCAACTCCACCAGCGCTGTCCCCGCCCCCACCATCCCAGTCTCCGCCTCCAGCAACACTCCAGCCACGCCCACCTCACCTGTCAAAAAGGTGAGTGTACCTGCAGGTAAAGTGTCTCctaaagaggaggagaggaaggacGAGTCGCCGGCGTCATGGAGACTGGGCCTGAGGAAGACAGGAAGTTACGGAGCGCTGGCGGAGATCAGCGCCACCAAAGAGGCTCAGAAGGAGAAAGACCTGAGCGGGGTGATGCGCTCGGCCTCCTCGCCTCGCCTCACCACCTCACTGGATAACAAGGACAAGGAGAAGGAGAAGGAGAAGTCTCTGGCGTATGTGGCTCCCACTTTCCCAAGAAGACACCCGAGTGCATCAGACATCGACGAGAAagaaaacagGGACTCGGCGGCTAGTCTGGTGCGCAGCGGCTCTTACACACGGAGACGCTGGGAAGAAGATCTGAAGAACAACGACACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327064 lncRNA downstream 3472 3226595 ~ 3282365 (-) False ppp1r12a
TU327068 lncRNA downstream 3472 3226595 ~ 3282365 (-) False ppp1r12a
TU327065 lncRNA downstream 3472 3257701 ~ 3282365 (-) False ppp1r12a
TU327066 lncRNA downstream 3472 3257701 ~ 3282365 (-) False ppp1r12a
TU327067 lncRNA downstream 3472 3257701 ~ 3282365 (-) False ppp1r12a
TU327127 lncRNA upstream 5467 3299257 ~ 3372332 (-) False rps16
XR_003402473.2 lncRNA upstream 61664 3355454 ~ 3356433 (-) True LOC113523901
TU327125 lncRNA upstream 69652 3363442 ~ 3372332 (-) False rps16
TU327132 lncRNA upstream 78834 3372624 ~ 3373018 (-) True G276038
TU327145 lncRNA upstream 121078 3414868 ~ 3415140 (-) True G276049
XM_034313335.1 mRNA downstream 38841 3205288 ~ 3246996 (-) True pawr
XM_034312982.1 mRNA downstream 607805 2672021 ~ 2678032 (-) True LOC117599441
XM_034312981.1 mRNA downstream 616501 2668355 ~ 2669336 (-) True LOC117599440
XM_034312980.1 mRNA downstream 618322 2664397 ~ 2667515 (-) True LOC117599439
XM_034312978.1 mRNA downstream 655509 2628665 ~ 2630328 (-) True LOC117599438
XM_034312986.1 mRNA upstream 75890 3369680 ~ 3384923 (-) True rps16
XM_034313336.1 mRNA upstream 136400 3430190 ~ 3494016 (-) False lin7a
XM_034313337.1 mRNA upstream 136400 3430190 ~ 3494013 (-) False lin7a
XM_034313387.1 mRNA upstream 251286 3545076 ~ 3691686 (-) True ppfia2
XM_026909954.2 mRNA upstream 445094 3738884 ~ 3755857 (-) False hcls1
TU327069 other downstream 84540 3142534 ~ 3201297 (-) True G275981
XR_004579901.1 other downstream 742206 2543147 ~ 2543631 (-) True LOC117599488
XR_004579903.1 other downstream 778743 2506587 ~ 2507094 (-) True LOC117599490
XR_004579918.1 other downstream 830756 2454252 ~ 2455081 (-) True LOC117599505
XR_004579944.1 other downstream 856896 2428508 ~ 2428941 (-) True LOC117599531
XR_004579995.1 other upstream 136400 3430190 ~ 3494016 (-) True lin7a
TU327175 other upstream 243207 3536997 ~ 3538743 (-) True G276075
XR_004580002.1 other upstream 271245 3565035 ~ 3571926 (-) True LOC117599595
TU327549 other upstream 442340 3736130 ~ 3737077 (-) True G276340
TU327682 other upstream 788488 4082278 ~ 4091863 (-) True G276421

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000019_04291124_04336735.mRNA True 4629 mRNA 0.45 25 CI01000019 4289702 ~ 4336852 (+)