RNA id: XM_034312985.1


Basic Information

Item Value
RNA id XM_034312985.1
length 4112
RNA type mRNA
GC content 0.52
exon number 24
gene id ppp1r12a
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3226595 ~ 3335017 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTGATTTGATGGGTGTAAGTCAGGGGAGATCTCGCGAGACAAAAAAAGCGCTGTTGTGGGGCTAGTGGCGGTATAAagtattgagagagagagagagcgagagagagagagagattataaaGCAGGGCAGGAAAAAAACTCGGGGGGGAATGAAGATATGGCGGACGCCAAGCAGAAGCGGAACGAGCAGTTGAAGCGATGGCTAGGCTCGGAGACGGATCTGGAGCCGCCGgttctgaagaagaagaagacgaaggTGAAGTTCGACGAGGGCGCCGTGTTCCTGGCCGCCTGCTCCAGCGGAGACACCGAGGAGGTGCTGCGGCTGCTGGAGCGCGGAGCCGACATCAACTACGCTAATGTGGACGGGCTAACCGCTCTGCACCAGGCGTGTATAGATGATAACGTGGACATGGTGACGTTCCTGGTGGAACACGGCGCCTGCATCAATCAGCCGGATAACGAGGGATGGATCCCACTGCACGCTGCCGCTTCCTGTGGATACATGGACATCGCGGAGTATTTGATCAGTCAGGGTGCGAATGTGGGCGTGGTCAATAGTGAGGGAGAGACACCGCTGGACATCGCAGAGGAAGAAGCCATGGAGGAGCTGCTGAAGAACGAAATCAATCGACAAGgTGTGGATATAGAGGCGgcgaggaaggaggaggagcgTATCATGCTGCGTGACGCACGTCAGTGGCTAAACAGCGGGCAAATAAACGACGTCCGGCACGCCAAGTCAGGAGGAACCGCGCTGCACGTCGCTGCTGCTAAAGGCTACACAGAGGTTTTAAAgctttTAATCCAGGCAGGTtatgatgtaaatattaaagattatGACGGCTGGACTCCTCTTCATGCTGCTGCTCACTGGGGGAAGGATGAAGCCTGCAGGATCCTGGTGGAGAACCTGTGCGACATGGACGTCGTTAATAAAGTGgtTCTCGTGCTCCAGCTGATGAGTGAAAAGAAAGACGCTAAGAAATCTCCTTTGATAGAGACCACCACTACAGCGGATAATAACCAGTCCACTAAACCGGCCGTGAAGAGTAAGGAGACGCTGTTACTAGAGGTGGAGAAGAACGCTCCTCACATCGAGAACCTGGAGTCGGAGAAagctgatgaggaagaggaggggaaGAAGGACGAGTCCAGCTGCTccagtgaggaagaggaggaagacgaCTCAGAGTCTGAGAATGAAGCAgATAAGACCAAATCAGCTGCTCCGGTCAGCAACTCCACCAGCGCTGTCCCCGCCCCCACCATCCCAGTCTCCGCCTCCAGCAACACTCCAGCCACGCCCACCTCACCTGTCAAAAAGGTGAGTGTACCTGCAGGTAAAGTGTCTCctaaagaggaggagaggaaggacGAGTCGCCGGCGTCATGGAGACTGGGCCTGAGGAAGACAGGAAGTTACGGAGCGCTGGCGGAGATCAGCGCCACCAAAGAGGCTCAGAAGGAGAAAGACCTGAGCGGGGTGATGCGCTCGGCCTCCTCGCCTCGCCTCACCACCTCACTGGATAACAAGGACAAGGAGAAGGAGAAGGAGAAGTCTCTGGCGTATGTGGCTCCCACTTTCCCAAGAAGACACCCGAGTGCATCAGACATCGACGAGAAagaaaacagGGACTCGGCGGCTAGTCTGGTGCGCAGCGGCTCTTACACACGGAGACGCTGGGAAGAAGATCTGAAGAACAACGACACaataaacaaacatttcaggACCCATGGTAGCACCTTCCACAGGTATTGGTCCGAGGATGGTgctgagaaagagaaggagtCGGCGACTGTAATCCCCACCATTAACACTGcagccaccaccaccaccaccaccacacacactactgcaggAGACGGCAGAGAGAGACGCAGatcATACCTCACTCCTGTGCGTGATGAGGAGTCAGAGTCTCAGAGGAAAGCTCGATCTCGACAGGCTCGACAGTCCAGAAGGTCCACACAGGGTGTGACCTTAACTGACCTCCAGGAGGCGGAGAAGACCATCGGACGCAATCGTCCGACTCGGTCccgagaggaggagaaggaaaaagaagagaaggaaaaacaagacaaggagaagcaggaggagaagaaggaggcgGAGACGAAGGAGGACGACTATCGATCACGCTATCGCTTCGAGGAGcgttaCCGCACTCCCTCCTTGAGCTCATCCACTTCCATTACTGTGCCGTCGTCCACCGTCACTTCTTCATCCCTCtacacttcctcctcctcttcctcgctGAACCGCCCTGACAGTCTGAGTGGAATCACGCCCAGCTACAGGAGCTCCGCCCGCGACGCTGAGAAAGataagaaagaagaggagaaggagggagaggatAAAACTCAGCCTCGCTCTATACGTGATCGCAGACGCCCTCGAGAGAAACGACGCTCTACCGGAGTCCCATTCTGGACCCAAGATagcgATGAGAATGACCCAGAGCAGCACTCGGACTCAGAGGAAGGAAGCACTAAAGCAGAACCTCAGagTGAAAGACTCTCGAGAAACGATGGCGTGCCCTCCGGTTCGTCGCTCACTGATCGTTACGATCACAGAGAGAGTCGCCGGCCATATTCACGCCTCGACCGAGACGACAACACTGACTACAAGAAGctTTATGAACAGGTCCAAGCTGAAAATGAGAAGCTGAAGTCTCAGTTACGCGACACACATCTGGAGCTGGATGATCTCAAGCGGCAGCTGGAGAAGGCCACACAGagacaGGAGCGCTTCGCTGATAGATCACAGCTGGAGATGGAGAAAAGGgaaagACGAGCTCTAGAAAGAAAGATCTCTGAGATGGAGGAGGAACTTAAgaCGCTACCCGACTTGAAGGCAGACAACCAGAGGCTAAAGGACGAGAACGGCGCTCTGATCCGAGTCATTAGTAAACTTTCTAAGTAGAGCAGCGCCCCGTGTGGTGAGCGTGGGGTATTACACGCTGAGAACCCCGTTACAGCAACCACGCAACAAAACACATCcaacctcctctctctctctctctctctatcactctctctgtctatcactctctctgtctatcactcgctcactcactctaCTCGTCCCCTAACGGCTCACTTCCTTCCTCCATGTTTGGTCTGGCTGCTGcagtacacgcacacacacgcgcacacacacacacacacacacacacacacacacgtcgaGTTTACAGGGCAGAGAGACAGCTTTAACCCACACGCCTACgtttgtacagaaaaaaaaggaaataaagaaaaacagtttattGGTGCCACAaactttcctttattttcttcctctttccgGCGTAGTGAGTGTATCTCTCTCGCTCCCTTCCCCTTCTTTTATCCTCCCTTTCATGtagaagctccgcccctttttcTCCCTCTGTGGTACTGTTTCTCAGCAGCGGATTTCCCAGCATTCAACAGTGTTGGGGCTCAAAACCTGAACCTGAACTCCTGCCaaccccctcctcctcctccacacacacacacacacacacacacacacacacacacacacacacacacacactcctctgtgtGAGTTCTGGTGGAATGTTGAGCTTTCACTGAATGTGCAATACGCCTCTGTTCCTTTATAAACAGCGCTTTAACCGGCAGTAGGAAGAAAAGTTCACTCCCTTTCTTTCACTCCCTTCTTTCACTCCCTTCTTTCACTCCTTCCTTTGTTCCTTTTGATTCGGAGCTTGtccctccctttttttttcattctgcctCTTTCTTCTCACTTCTCCCCTCTtactctttcacttttttcttttttttttccctctccctaCATTTTTTAACTCCCtaggttatttttttgttcattgtttttctcctccttccttccttcctccttgtTACATCTTTCCTTCCTCCTCTTTTACTCCCTTTTCCCTGTCACACTTACTTTTTCCTCCTCCCTACTTTACTTTTATTCCTCCTTACTTCCTTTTCCTATTTTCTACTTCCTGTTCCCCCTCCCTACTTCATGTTTCCCCATTCTTACTTCTTCTAACTTCTACTTTCCCTAGAtcctcttccttctctctccttcctcatcctcttcctcctctccttcctccttcccCT

Function

GO: NA

KEGG:

id description
K06270 PPP1R12A, MYPT1; protein phosphatase 1 regulatory subunit 12A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327113 lncRNA downstream 37814 3217719 ~ 3221204 (-) True G276021
TU327114 lncRNA downstream 39968 3218189 ~ 3219050 (-) True G276022
TU326970 lncRNA downstream 277156 2979837 ~ 2981862 (-) True G275891
TU326881 lncRNA downstream 413114 2834700 ~ 2845904 (-) True G275815
TU326553 lncRNA downstream 549639 2632426 ~ 2709379 (-) True G275536
XR_003402473.2 lncRNA upstream 20437 3355454 ~ 3356433 (-) True LOC113523901
TU327125 lncRNA upstream 28425 3363442 ~ 3372332 (-) False rps16
TU327132 lncRNA upstream 37607 3372624 ~ 3373018 (-) True G276038
TU327145 lncRNA upstream 79851 3414868 ~ 3415140 (-) True G276049
TU327261 lncRNA upstream 304950 3639967 ~ 3640783 (-) True G276153
XM_034313335.1 mRNA downstream 12022 3205288 ~ 3246996 (-) True pawr
XM_034312982.1 mRNA downstream 580986 2672021 ~ 2678032 (-) True LOC117599441
XM_034312981.1 mRNA downstream 589682 2668355 ~ 2669336 (-) True LOC117599440
XM_034312980.1 mRNA downstream 591503 2664397 ~ 2667515 (-) True LOC117599439
XM_034312978.1 mRNA downstream 628690 2628665 ~ 2630328 (-) True LOC117599438
XM_034312986.1 mRNA upstream 34663 3369680 ~ 3384923 (-) True rps16
XM_034313336.1 mRNA upstream 95173 3430190 ~ 3494016 (-) False lin7a
XM_034313337.1 mRNA upstream 95173 3430190 ~ 3494013 (-) False lin7a
XM_034313387.1 mRNA upstream 210059 3545076 ~ 3691686 (-) True ppfia2
XM_026909954.2 mRNA upstream 403867 3738884 ~ 3755857 (-) False hcls1
TU327069 other downstream 57721 3142534 ~ 3201297 (-) True G275981
XR_004579901.1 other downstream 715387 2543147 ~ 2543631 (-) True LOC117599488
XR_004579903.1 other downstream 751924 2506587 ~ 2507094 (-) True LOC117599490
XR_004579918.1 other downstream 803937 2454252 ~ 2455081 (-) True LOC117599505
XR_004579944.1 other downstream 830077 2428508 ~ 2428941 (-) True LOC117599531
XR_004579995.1 other upstream 95173 3430190 ~ 3494016 (-) True lin7a
TU327175 other upstream 201980 3536997 ~ 3538743 (-) True G276075
XR_004580002.1 other upstream 230018 3565035 ~ 3571926 (-) True LOC117599595
TU327549 other upstream 401113 3736130 ~ 3737077 (-) True G276340
TU327682 other upstream 747261 4082278 ~ 4091863 (-) True G276421

Expression Profile