RNA id: TU327127


Basic Information

Item Value
RNA id TU327127
length 597
lncRNA type read_through
GC content 0.46
exon number 4
gene id rps16
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3299257 ~ 3384923 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatatCAATAAATTAAAGTGCAGAGAGATGAACATTAATTGAaagaatgtaaatgtgaatataaaagTAATAGAGTGAATGAAAGagtaaaatatgtataaatacacaGGAATGCAAAcactgagggtgtgtgtgtgagagagatgtgaagagtgtgtgtgtgtgtgtgtgagagagagagcacagtagttaaccgtgtgtgtgtgtgtgtgtgtgtgttccagctgCTGGAGCCGATCCTGCTGTTGGGAAAGGAACGCTTCGCTGGTGTTGATATCCGAGTGCGTGTGAAGGGCGGAGGACACGTCGCGCAAGTCTacgCGATTCGTCAGGCCATCTCCAAAGCCCTGGTCGCTTACTACCAGAAGTATGTGGACGAGGCGTCTAAGAAGGAGATAAAGGACATCCTGATCCAGTACGATAGAACTCTGCTGGTCGCTGATCCACGCCGCTGCGAGTCCAAGAAGTTCGGAGGTCCAGGAGCTCGCGCTCGCTACCAGAAGTCCTACCGTTAACCtcgacacacactcacacactcgctcacacactcttcaccaaAATAAACCTGAGGAGAAAAACAaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327064 lncRNA downstream 16892 3226595 ~ 3282365 (-) False ppp1r12a
TU327068 lncRNA downstream 16892 3226595 ~ 3282365 (-) False ppp1r12a
TU327065 lncRNA downstream 16892 3257701 ~ 3282365 (-) False ppp1r12a
TU327066 lncRNA downstream 16892 3257701 ~ 3282365 (-) False ppp1r12a
TU327067 lncRNA downstream 16892 3257701 ~ 3282365 (-) False ppp1r12a
TU327132 lncRNA upstream 292 3372624 ~ 3373018 (-) True G276038
TU327145 lncRNA upstream 42536 3414868 ~ 3415140 (-) True G276049
TU327261 lncRNA upstream 267635 3639967 ~ 3640783 (-) True G276153
TU327577 lncRNA upstream 386879 3759211 ~ 3829402 (-) False golgb1
TU327559 lncRNA upstream 430061 3802393 ~ 3815365 (-) True G276342
XM_034313335.1 mRNA downstream 52261 3205288 ~ 3246996 (-) True pawr
XM_034312982.1 mRNA downstream 621225 2672021 ~ 2678032 (-) True LOC117599441
XM_034312981.1 mRNA downstream 629921 2668355 ~ 2669336 (-) True LOC117599440
XM_034312980.1 mRNA downstream 631742 2664397 ~ 2667515 (-) True LOC117599439
XM_034312978.1 mRNA downstream 668929 2628665 ~ 2630328 (-) True LOC117599438
XM_034313336.1 mRNA upstream 57858 3430190 ~ 3494016 (-) False lin7a
XM_034313337.1 mRNA upstream 57858 3430190 ~ 3494013 (-) False lin7a
XM_034313387.1 mRNA upstream 172744 3545076 ~ 3691686 (-) True ppfia2
XM_026909954.2 mRNA upstream 366552 3738884 ~ 3755857 (-) False hcls1
XM_026909953.2 mRNA upstream 366552 3738884 ~ 3755856 (-) True hcls1
TU327062 other downstream 5467 3285837 ~ 3293790 (-) False ppp1r12a
TU327069 other downstream 97960 3142534 ~ 3201297 (-) True G275981
XR_004579901.1 other downstream 755626 2543147 ~ 2543631 (-) True LOC117599488
XR_004579903.1 other downstream 792163 2506587 ~ 2507094 (-) True LOC117599490
XR_004579918.1 other downstream 844176 2454252 ~ 2455081 (-) True LOC117599505
XR_004579995.1 other upstream 57858 3430190 ~ 3494016 (-) True lin7a
TU327175 other upstream 164665 3536997 ~ 3538743 (-) True G276075
XR_004580002.1 other upstream 192703 3565035 ~ 3571926 (-) True LOC117599595
TU327549 other upstream 363798 3736130 ~ 3737077 (-) True G276340
TU327682 other upstream 709946 4082278 ~ 4091863 (-) True G276421

Expression Profile