RNA id: XM_034312986.1


Basic Information

Item Value
RNA id XM_034312986.1
length 623
RNA type mRNA
GC content 0.52
exon number 5
gene id rps16
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3299257 ~ 3384923 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGaacaccatcacaccacagaGTGTAAAAAACACCACAGAGTGTAAAACACCACAGAGTGTGAAAAACACCACAGAGTGTAAAACACCACAGAGACGGAAAAGGACAGGTGACGCCACACAGGAAGTCCCGAGCGAGTCTGAGAGCGTTAGCAACACGCGCTACACCAACTCCACAATTAGTGAGGAGAACCCTGAGATGTTTGgtgtgtgtgagagagagagcacagtagttaaccgtgtgtgtgtgtgtgtgtgtgtgttccagctgCTGGAGCCGATCCTGCTGTTGGGAAAGGAACGCTTCGCTGGTGTTGATATCCGAGTGCGTGTGAAGGGCGGAGGACACGTCGCGCAAGTCTacgCGATTCGTCAGGCCATCTCCAAAGCCCTGGTCGCTTACTACCAGAAGTATGTGGACGAGGCGTCTAAGAAGGAGATAAAGGACATCCTGATCCAGTACGATAGAACTCTGCTGGTCGCTGATCCACGCCGCTGCGAGTCCAAGAAGTTCGGAGGTCCAGGAGCTCGCGCTCGCTACCAGAAGTCCTACCGTTAACCtcgacacacactcacacactcgctcacacactcttcaccaaAATAAACCTGAGGAGAAAAACA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02960 RP-S16e, RPS16; small subunit ribosomal protein S16e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402473.2 lncRNA downstream 13247 3355454 ~ 3356433 (-) True LOC113523901
TU327064 lncRNA downstream 87315 3226595 ~ 3282365 (-) False ppp1r12a
TU327068 lncRNA downstream 87315 3226595 ~ 3282365 (-) False ppp1r12a
TU327065 lncRNA downstream 87315 3257701 ~ 3282365 (-) False ppp1r12a
TU327066 lncRNA downstream 87315 3257701 ~ 3282365 (-) False ppp1r12a
TU327145 lncRNA upstream 29945 3414868 ~ 3415140 (-) True G276049
TU327261 lncRNA upstream 255044 3639967 ~ 3640783 (-) True G276153
TU327577 lncRNA upstream 374288 3759211 ~ 3829402 (-) False golgb1
TU327559 lncRNA upstream 417470 3802393 ~ 3815365 (-) True G276342
TU327583 lncRNA upstream 427617 3812540 ~ 3813351 (-) True G276353
XM_034312985.1 mRNA downstream 34663 3259018 ~ 3335017 (-) True ppp1r12a
XM_034313335.1 mRNA downstream 122684 3205288 ~ 3246996 (-) True pawr
XM_034312982.1 mRNA downstream 691648 2672021 ~ 2678032 (-) True LOC117599441
XM_034312981.1 mRNA downstream 700344 2668355 ~ 2669336 (-) True LOC117599440
XM_034312980.1 mRNA downstream 702165 2664397 ~ 2667515 (-) True LOC117599439
XM_034313336.1 mRNA upstream 45267 3430190 ~ 3494016 (-) False lin7a
XM_034313337.1 mRNA upstream 45267 3430190 ~ 3494013 (-) False lin7a
XM_034313387.1 mRNA upstream 160153 3545076 ~ 3691686 (-) True ppfia2
XM_026909954.2 mRNA upstream 353961 3738884 ~ 3755857 (-) False hcls1
XM_026909953.2 mRNA upstream 353961 3738884 ~ 3755856 (-) True hcls1
TU327062 other downstream 75890 3285837 ~ 3293790 (-) False ppp1r12a
TU327069 other downstream 168383 3142534 ~ 3201297 (-) True G275981
XR_004579901.1 other downstream 826049 2543147 ~ 2543631 (-) True LOC117599488
XR_004579903.1 other downstream 862586 2506587 ~ 2507094 (-) True LOC117599490
XR_004579918.1 other downstream 914599 2454252 ~ 2455081 (-) True LOC117599505
XR_004579995.1 other upstream 45267 3430190 ~ 3494016 (-) True lin7a
TU327175 other upstream 152074 3536997 ~ 3538743 (-) True G276075
XR_004580002.1 other upstream 180112 3565035 ~ 3571926 (-) True LOC117599595
TU327549 other upstream 351207 3736130 ~ 3737077 (-) True G276340
TU327682 other upstream 697355 4082278 ~ 4091863 (-) True G276421

Expression Profile