RNA id: TU327577


Basic Information

Item Value
RNA id TU327577
length 2110
lncRNA type read_through
GC content 0.39
exon number 2
gene id golgb1
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3759211 ~ 3829402 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagagagagagagagagagagagagagagagagagagagatggagagggatggagagagagagatggagagagagaagctttACACTTTCTCTTTACAGAGAAACAAGGATAACAAAGGGAGAGAGTCTATCTCCGAGAGGGATCGACAGTTACAGAACGTGTACTGACTTACAAACAGGGcgaacttttatttttttttacttttttatttttttttttttaaaggaaggaATTTCTTAGCTAAATTGCCAAAGTCTTCCTCATGGAGTTTCATCGACGTGGCCAAAACTCTCACTGCCAAAATCTACACTATATCACAGGGGCCATTAAAATAGTGTCATTATGTAGAATTAGTGTAAACATTCGACCACATTCCAGGCGACTAAAAActattttgattaaaatctaCATTCAGTAGTGCAGGAATGttactgtaatataatatagtgcAATGCGAGAGGTCAGAATTCTCCATGATTCAGTGTCACACTGCTGCAGTACTACTACTTactatatagtttatatatatacatatacattaaatatgaaGGATTGCAgcattttacacaaaattttATGAGAAACAGGACCTTCATGAGCTGTGAGTTAAGATCTTCAGATCTTCTAAAGATGCAGCAggtgaaatgatgaaatgtttgaGATATTTCTCAGAAATACAGTAATTACAAGATGAAGATTTAGAGATTCTAACTTGGACATGTTCGTCTCCATGGAGTCAAGAAATTAGTcgtttttctatttctgtttccGATCTGCTCAGATGAGAAACTCTGGAGGAACCTATGTGCTATGTTTGTACAAtgttaaatcaaattaaagcaGCGGTCAGTGATTTTTTAAGTCGAATGCTTCTCCTCATATTGACCCAGCTTCATTAAAACGTCTGCTCAGAGGAGCAACTCCGTATAATGGAGACTGCCAACTTCCAACCAATCATGACACAGTAGGGAAAGACAGGAGTCATAATTGTACAATGTTGAATCagattaaagcagcagtcagtgatttttaagtaaaaaatttCTCATATTGAGTCCACTTCAACAAAACATCTGCTTAGCTCAAAGGAGCAACCGGTCAGGACACAGCGGCGTCTccacctgtcagtcatgttgTTTGTCACTTTAGAAAGCTCCGCCCACCTGCAGACGTTTTCATGCGTTCTAGCCTTACGCATGTGTAAATCACGATAAAATCAAGCACAAACTAAAACCACCAGCTTTTTTCACAGTGAAAAGGTGTAACTTTGGGATTTAAAGGTGTAGTCTGTGATTTTAGCAGAAGCTAGCTCTttgaaaactcaaaaaaaattcACCCCCTTTCTAAATTGAAGGGCAACATGATTGACAGGCAGGTAGAGACGCCGCTGtgtcctgattggctggatgtCGGATGCTGCCTCAATATGACGAGAAGTGTTTGacttaaaaatcactgactgctgctttaatttcatttccCATGGtataaacacattacatttcCTGTCAGTTCCCACTTAAAAAGTAACGTGTTTAAACTTAAACAGTTGAAAAGTGTTAAGCTGACTTCTAGCTATCATAACATCGTTTTGTCGTTGTGTGTGTTGCCATAGAAACGACTGATTTTGGAATCTGAGGCGAGTCCGACGCGGAGCTCCGAGTCGAATCACTGATTTCTTCATCTTGTAATTACCGTGATGTTAAATTGATTCCTTcgtattttagtttttaatgtaGGGGATTTCTTAGTCTTCTTCTTTCCTGACTTCGCTGTTGCCGTGGTAACAACTCTAAATGACTGCAGCTCACTACGAATGGTGCACATTCCACGATCAGGGTTTTAATCTGGACTTTATTCGTTTAAATCAGATCAAGTAAAACACTAATTACAGGGTTCGTGTGACTTTTCCCCTCGTCCTGCGAGCTCCTTTCCCTTTTAAGGACTTTGATTGTGTTGGGATCGGACGTGGTCCTGATGTTAACTCTTTGTTTACCGGGTGATTTTAAGCACAGCCCTGACTGGGCTTCCTGTTTTACCTGTATAATGACCTGTAAACCATCCGTTTCCTCCTCTGTGTTTCTTCGTAGttattttttggaaataaaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327261 lncRNA downstream 118428 3639967 ~ 3640783 (-) True G276153
TU327145 lncRNA downstream 344071 3414868 ~ 3415140 (-) True G276049
TU327132 lncRNA downstream 386193 3372624 ~ 3373018 (-) True G276038
TU327127 lncRNA downstream 386879 3299257 ~ 3372332 (-) False rps16
TU327616 lncRNA upstream 71860 3901262 ~ 3904931 (-) False G276384
TU327618 lncRNA upstream 71860 3901262 ~ 3902898 (-) True G276384
TU327625 lncRNA upstream 84137 3913539 ~ 3913989 (-) True G276387
TU327626 lncRNA upstream 84137 3913539 ~ 3913989 (-) False G276387
TU327627 lncRNA upstream 85926 3915328 ~ 3916117 (-) True G276388
XM_026909954.2 mRNA downstream 3354 3738884 ~ 3755857 (-) False hcls1
XM_026909953.2 mRNA downstream 3355 3738884 ~ 3755856 (-) True hcls1
XM_034313387.1 mRNA downstream 67525 3545076 ~ 3691686 (-) True ppfia2
XM_034313336.1 mRNA downstream 265195 3430190 ~ 3494016 (-) False lin7a
XM_034313337.1 mRNA downstream 265198 3430190 ~ 3494013 (-) False lin7a
XM_034313181.1 mRNA upstream 28113 3857515 ~ 3906653 (-) True kmt2e
XM_034313185.1 mRNA upstream 89900 3919302 ~ 3945301 (-) True kdm7aa
XM_026909970.2 mRNA upstream 215304 4044706 ~ 4060514 (-) True cd36
XM_026909919.2 mRNA upstream 501858 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA upstream 501858 4331260 ~ 4343545 (-) True LOC113523868
TU327549 other downstream 22134 3736130 ~ 3737077 (-) True G276340
XR_004580002.1 other downstream 187285 3565035 ~ 3571926 (-) True LOC117599595
TU327175 other downstream 220468 3536997 ~ 3538743 (-) True G276075
XR_004579995.1 other downstream 265195 3430190 ~ 3494016 (-) True lin7a
TU327062 other downstream 465421 3285837 ~ 3293790 (-) False ppp1r12a
TU327682 other upstream 252876 4082278 ~ 4091863 (-) True G276421
TU327840 other upstream 468458 4297860 ~ 4300524 (-) True G276530
LOC117599555 other upstream 528137 4357539 ~ 4457121 (-) True LOC117599555
LOC117599551 other upstream 531930 4361332 ~ 4361942 (-) True LOC117599551
LOC117599554 other upstream 556940 4386342 ~ 4387104 (-) True LOC117599554

Expression Profile