RNA id: TU327616


Basic Information

Item Value
RNA id TU327616
length 1067
lncRNA type intronic
GC content 0.32
exon number 2
gene id G276384
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3901262 ~ 3904931 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gctatctatctatccatctctctctctctctctctctctgttttttaacAAAGCTGAACTCCTGGTTGTAAGTCTGTGTGATGAGTAATGAGAGTGTaggatacagagagagagagagagagagagagaagagagggaaagagggagtgtgagtgtgttttaagGTTTAATTCCTGAAATTAGATGTAATTTGGACCATCTGAGCTCCAACAGCagccttttttccctcttcagcAGGCTGTTTTTATTACAAACTGCACTTgtgaagctttttttaaaatatatatttatatcctaATATGAACCGTGACATAATGCATCTTATTATAATCTTAATCTTATAAATATTAAAGCTCTAAGCtccactgttattattattattattattatctcgaGATCTCGTATTTCTGATAtaacttgtctttttttttttattaattttgcaaATCTTAGAGGGGAAAATATTACAGTCCATCCAGGATGACTGATCAGAGCTTTACACTGTcgctgtaatttaatttaattcaataaataaacattaaaatctgaataaaatccCAAATCATCATCTCTGCACTTCATCCCCTTCAACTGCGCAAACTGctgtatttcttatttttaaccatttaaatcctcactgctgacacagtttacacaaaattatacaaaacTACACCTTTATAAAtctaaatgaactaaaatattacaatataaaccGCTTTAAAAACGTTTTATTCGCCTTTTTCTTTCAGGCGCACGAGCGTAATTCAATCCGCGTACGTATTAACGTTAGCATGTTAGCTTGTTAGCATGAAGCTATTAACTAGCCATATTATTATCTGGACCTCAGGCAGATTTAAACCGCTCACTCGTTAGAAATATGAGTTAGTACAGTAGCATAAGTAACATATCGATATttttatgaaggaaaaaaaagttactttcgagaaaaaaataaaaataaaacggTTAGCttgctaaccagctagctagcatgttcgtgttttttttttttttttttttttttttttttttttttaaacaacgaGTTCAAAAGGTAAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327577 lncRNA downstream 71860 3759211 ~ 3829402 (-) False golgb1
TU327559 lncRNA downstream 85897 3802393 ~ 3815365 (-) True G276342
TU327583 lncRNA downstream 87911 3812540 ~ 3813351 (-) True G276353
TU327261 lncRNA downstream 260479 3639967 ~ 3640783 (-) True G276153
TU327145 lncRNA downstream 486122 3414868 ~ 3415140 (-) True G276049
TU327625 lncRNA upstream 8608 3913539 ~ 3913989 (-) True G276387
TU327626 lncRNA upstream 8608 3913539 ~ 3913989 (-) False G276387
TU327627 lncRNA upstream 10397 3915328 ~ 3916117 (-) True G276388
TU327644 lncRNA upstream 63764 3968695 ~ 4042521 (-) True G276395
TU327671 lncRNA upstream 165517 4070448 ~ 4071037 (-) True G276420
XM_034312987.1 mRNA downstream 89646 3798341 ~ 3811616 (-) True orc5
XM_034313225.1 mRNA downstream 118479 3760116 ~ 3782783 (-) True golgb1
XM_026909954.2 mRNA downstream 145405 3738884 ~ 3755857 (-) False hcls1
XM_026909953.2 mRNA downstream 145406 3738884 ~ 3755856 (-) True hcls1
XM_034313387.1 mRNA downstream 209576 3545076 ~ 3691686 (-) True ppfia2
XM_034313185.1 mRNA upstream 14371 3919302 ~ 3945301 (-) True kdm7aa
XM_026909970.2 mRNA upstream 139775 4044706 ~ 4060514 (-) True cd36
XM_026909919.2 mRNA upstream 426329 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA upstream 426329 4331260 ~ 4343545 (-) True LOC113523868
XM_026912198.2 mRNA upstream 879197 4784128 ~ 4792797 (-) True psmc2
TU327549 other downstream 164185 3736130 ~ 3737077 (-) True G276340
XR_004580002.1 other downstream 329336 3565035 ~ 3571926 (-) True LOC117599595
TU327175 other downstream 362519 3536997 ~ 3538743 (-) True G276075
XR_004579995.1 other downstream 407246 3430190 ~ 3494016 (-) True lin7a
TU327062 other downstream 607472 3285837 ~ 3293790 (-) False ppp1r12a
TU327682 other upstream 177347 4082278 ~ 4091863 (-) True G276421
TU327840 other upstream 392929 4297860 ~ 4300524 (-) True G276530
LOC117599555 other upstream 452608 4357539 ~ 4457121 (-) True LOC117599555
LOC117599551 other upstream 456401 4361332 ~ 4361942 (-) True LOC117599551
LOC117599554 other upstream 481411 4386342 ~ 4387104 (-) True LOC117599554

Expression Profile