RNA id: TU327626


Basic Information

Item Value
RNA id TU327626
length 429
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G276387
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3913539 ~ 3913989 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTTTAATGTCTCAGGTTGTTGTTATTTAGTTGTTTGgttaatattttgattttaaagtCACCTTTAgctcagagtgtgagtgagtgaggagctGACATTGTACTCAGCCTGTTAGCATAGTTAGCTTAGCTTCCTATAAACCTCCAGCTTGACACTTACTTCCGGATAAAAGTGTGCTGAGGTCCGCGTCTGATGAGCTGAGCTCCTGCCCTGAGGACGCTCACTGTCCTCCCCAGAGCCGACATTttacccaaaacacacacacacacacaaagcgcgCAACAAAATGTcaccttcctttcttcctcgcCTGCTGTACGGAGTCAAacgcactgcgcatgcgcggaaAACAGCGCATGCGCACTACAAGTCTCTCTCAGCGACACGACGCTTCCTGAAATAACTTGTTTAAAGAGTCAAAGATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327616 lncRNA downstream 8608 3901262 ~ 3904931 (-) False G276384
TU327618 lncRNA downstream 10641 3901262 ~ 3902898 (-) True G276384
TU327577 lncRNA downstream 84137 3759211 ~ 3829402 (-) False golgb1
TU327559 lncRNA downstream 98174 3802393 ~ 3815365 (-) True G276342
TU327583 lncRNA downstream 100188 3812540 ~ 3813351 (-) True G276353
TU327627 lncRNA upstream 1339 3915328 ~ 3916117 (-) True G276388
TU327644 lncRNA upstream 54706 3968695 ~ 4042521 (-) True G276395
TU327671 lncRNA upstream 156459 4070448 ~ 4071037 (-) True G276420
TU327672 lncRNA upstream 156459 4070448 ~ 4142948 (-) False G276420
TU327676 lncRNA upstream 156459 4070448 ~ 4142948 (-) False G276420
XM_034313181.1 mRNA downstream 6886 3857515 ~ 3906653 (-) True kmt2e
XM_034312987.1 mRNA downstream 101923 3798341 ~ 3811616 (-) True orc5
XM_034313225.1 mRNA downstream 130756 3760116 ~ 3782783 (-) True golgb1
XM_026909954.2 mRNA downstream 157682 3738884 ~ 3755857 (-) False hcls1
XM_034313185.1 mRNA upstream 5313 3919302 ~ 3945301 (-) True kdm7aa
XM_026909970.2 mRNA upstream 130717 4044706 ~ 4060514 (-) True cd36
XM_026909919.2 mRNA upstream 417271 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA upstream 417271 4331260 ~ 4343545 (-) True LOC113523868
XM_026912198.2 mRNA upstream 870139 4784128 ~ 4792797 (-) True psmc2
TU327549 other downstream 176462 3736130 ~ 3737077 (-) True G276340
XR_004580002.1 other downstream 341613 3565035 ~ 3571926 (-) True LOC117599595
TU327175 other downstream 374796 3536997 ~ 3538743 (-) True G276075
XR_004579995.1 other downstream 419523 3430190 ~ 3494016 (-) True lin7a
TU327062 other downstream 619749 3285837 ~ 3293790 (-) False ppp1r12a
TU327682 other upstream 168289 4082278 ~ 4091863 (-) True G276421
TU327840 other upstream 383871 4297860 ~ 4300524 (-) True G276530
LOC117599555 other upstream 443550 4357539 ~ 4457121 (-) True LOC117599555
LOC117599551 other upstream 447343 4361332 ~ 4361942 (-) True LOC117599551
LOC117599554 other upstream 472353 4386342 ~ 4387104 (-) True LOC117599554

Expression Profile