RNA id: TU327627


Basic Information

Item Value
RNA id TU327627
length 764
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G276388
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3915328 ~ 3916117 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCAAAGTGGTGCATGATGGGATTTCTGTACAGCGTTACGGACGCTGACCCTCGCTGGTGCATGATGGGATTTCATCAGCGCTCTGGATTCTGTTTGTTAACATTTTTCAGCGTctattttgttaaaatgaaacaataaaagtCCACAGGAGAAGCGACTCGTCcactgtttgtttctttttattttctttttttaaatagacgTGTAAATCAGACTAAACGAGTCTCTGTACAGCAGGAAGTCAGGACGAGTTTAACACCAGTGcgggttacacacacacacacacacacacacacacacactccactcactccactcactcCACTCAGCACCTGGAGAGAAAATAAGCAGGAAGAAAAGGGACAAAAAAGATAAATGTTTAGATTCAGTGCTATATAcaacttctacacacacacacactcactcacacacacacgcacacacactcactggtgTGTCTGATGATGTCACTCGTCATCAGGAGGAATTCCCAGCTCCTGGTCGGTCCAGGCGTCTGTGTCCGGCCACGGAAAATGACCCTGAGGGAAGAAAACACAGTTTATactcagtactgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgagagactcaCGAGCACGGCGTCTGAATCGTGCCAGAAGTGCCACAGGATCCAGAACCACATGAAGCCGCTGAGCAGCTCGGAGCGAAACTTCTGGTGTTTAGTGATCTGAGGAGGCTGACGGTACTGAGCCACGATGTGTGGAGCTCCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327625 lncRNA downstream 1339 3913539 ~ 3913989 (-) True G276387
TU327626 lncRNA downstream 1339 3913539 ~ 3913989 (-) False G276387
TU327616 lncRNA downstream 10397 3901262 ~ 3904931 (-) False G276384
TU327618 lncRNA downstream 12430 3901262 ~ 3902898 (-) True G276384
TU327577 lncRNA downstream 85926 3759211 ~ 3829402 (-) False golgb1
TU327644 lncRNA upstream 52578 3968695 ~ 4042521 (-) True G276395
TU327671 lncRNA upstream 154331 4070448 ~ 4071037 (-) True G276420
TU327672 lncRNA upstream 154331 4070448 ~ 4142948 (-) False G276420
TU327676 lncRNA upstream 154331 4070448 ~ 4142948 (-) False G276420
TU327678 lncRNA upstream 154331 4070448 ~ 4142226 (-) False G276420
XM_034313181.1 mRNA downstream 8675 3857515 ~ 3906653 (-) True kmt2e
XM_034312987.1 mRNA downstream 103712 3798341 ~ 3811616 (-) True orc5
XM_034313225.1 mRNA downstream 132545 3760116 ~ 3782783 (-) True golgb1
XM_026909954.2 mRNA downstream 159471 3738884 ~ 3755857 (-) False hcls1
XM_034313185.1 mRNA upstream 3185 3919302 ~ 3945301 (-) True kdm7aa
XM_026909970.2 mRNA upstream 128589 4044706 ~ 4060514 (-) True cd36
XM_026909919.2 mRNA upstream 415143 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA upstream 415143 4331260 ~ 4343545 (-) True LOC113523868
XM_026912198.2 mRNA upstream 868011 4784128 ~ 4792797 (-) True psmc2
TU327549 other downstream 178251 3736130 ~ 3737077 (-) True G276340
XR_004580002.1 other downstream 343402 3565035 ~ 3571926 (-) True LOC117599595
TU327175 other downstream 376585 3536997 ~ 3538743 (-) True G276075
XR_004579995.1 other downstream 421312 3430190 ~ 3494016 (-) True lin7a
TU327062 other downstream 621538 3285837 ~ 3293790 (-) False ppp1r12a
TU327682 other upstream 166161 4082278 ~ 4091863 (-) True G276421
TU327840 other upstream 381743 4297860 ~ 4300524 (-) True G276530
LOC117599555 other upstream 441422 4357539 ~ 4457121 (-) True LOC117599555
LOC117599551 other upstream 445215 4361332 ~ 4361942 (-) True LOC117599551
LOC117599554 other upstream 470225 4386342 ~ 4387104 (-) True LOC117599554

Expression Profile