RNA id: TU327644


Basic Information

Item Value
RNA id TU327644
length 3762
lncRNA type inter_gene
GC content 0.37
exon number 6
gene id G276395
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3968695 ~ 4042521 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTGTTTAATGCAAATATTCAGGCtgataacattaataaatagaaatacacAACATTTATGACAAGgttggaaaaagaaaacatcgaCATTCGAACCATTTTTCATCTACAGAAGTAATCCAGGAGCACGATGCTGTTAATGAATGTATTCATGTGAGAAGGTGAATCCTCTGCAGAATCGCAGATTGTGTCAGAATTCGAGACAGAAGGAAATAAAAGCGTGTAAATTAGCGTTCAGGAGTGTGTTACTTTAACACAGCCGGCTCAGGAGACCGGTTTAACCCTTTCACTTCTCTTTAATCACATCGACACTGTGCCACGTTAATGACACCGGAAACGCTGGCTGATTATTTAACACTTTATCTCTCaccaaacattttataaaactacAAACTGTTAGCTCTATGTCACATGACCTCACGCTTTTAGCTGTAAAATTAACCGCTACTGGTCATGTGACGTCAACACGTTTATCtaaacactaataaatatattatagtatTACATCCATTTCTCTGTCAAACTGGCTGTCTGataatctgtctgtgtccatctctatctatctatctatctatctatctgtctatctgtctatcgatctatctgtcaaaCTGTCTGTCTGATAATCTGACTGTGtccatctctatctatctatctatctatctatctatctatctatctatctgtcaaaCTATCTATAAGTCTGTCTCTAGTCTGTCTGATAATCTGTCTGTCATcgctttatctgtctgtctgtctgtccttaatctgtctgtgtgtccatctctctatctctctgacTGTCTATCTGTGAGTCttttgtatctgtctgtctgacaaTCTGATTGTGTGtccatctctatctatctatccacctgtctgtctctagtCTATCTGataatctgtctgtctatctatctatctatctatctatctatctatctatctttctgtctgtctgtctgactttctgtctgtctatgagtttgtctgtctgtctgtctatctgttggAGTGTCCATCTGTCtacatatctgtctgtctgtctgtctgtctgtatttatttctgtctatctgctggactttctgtctgtgtatctgtttatcactctgtctttcctctcctttatctgtctgtatgtctatctgtctgactgtctgtctatccGGTTTCCACATTGTGCAGATAATAAAGGAATGATACAAACTGCATATGATAAGAATAAATGAGTGTAAAATCTCTAACAcgtgcagagagacagaaacacacctCAGTAGATTCAGTTGTACTGAAGCGATTAGTCTGGACGTGAATGGAATtacttttataaaattaaaaaatacataattctTAAATTCCTAAATCGAAGTCGTTGTAGTTTTAAACCCGTCTCCTGAGTCCAGCTGAGTGAAGTGAAGTATTTTACACCATGCGCATgttcacaaacacaacaacaacaacaacaacaacaacaatgacatcagcgctttaaataaatctgtacacCTCACTTACACTGTGAATtataccccacacacacacacacacacacacacacacacacacacacacacgttttggAATAACAGCATGTGTGAACATGGGCGGAGCTTAAGGCTTAAGtaatttaatcagccaatcacacacTTGATCATATGATATCACTGCTAGCTTTCcttatttattctttctgtcATGCTTAgcatacttttttatattacttAGCAACATAAATTATGCTAACAAGCTGTATATTTAgcctagctaacattagcatcATCGCACTAGCAAAAGCGTGAaagtttgtgattggctgatcgaATTTAGCGCAATCTGTTataaagagtgtgtggtttgctagcaagctagttaacGTTAGGTAACGTTAGGTACTGTGGTGGTGAGGAGGTTCGTGATTGGCTGGTTGAATTTAACGTAATCTCTGCCCTTTTCATCCAGTGTCGTTAGCACATGTTGTATTGTTAACATGGACAAATCCAAATTAGTGGCACTTGGGAGCAGGCTGCCTACGTAGGGAGCATTTCTTTAAGATTTTGGACAAATTTGAAGTTAGAGAAGGCGATAATTctgtttaatgcattttaattaacaatgtttagtatttttttatttttaaattgaatttttgaCACTACAACAGTCGAGCTTGTGAGTTGAGCTAAAAGACGTTCTGATAAAGTAGAAGGCGAGTAAAATAACATTTGCAccatcaatctctctctcctctgtttgTTCTCTAACATCTGTTACACAGCTGGATGTACGCCGGTCTCTCCAGCACATTTTCATCTCAGACCCTCAAACCCTTAAATCATCTGCACGGAATTCCCAATTCACAGACACAACATTTTACAAGAGGTGAGCGGTACGTTCCGCTCTGCTAAACGGCTAGCTCCTGTGTGACTGGGAcagtttaaagtgtgtgtgtgtgtgtgtgtgttattgtgagGTATTACAGTTTGACGGATTGATTTATACACCACAAATTTGCCTCATTGCTCAAAACCTTGGCTGCGAGTGTAAATCAGAGGAAGATTCCTCTTCCTCTAGCTAGCCTTCGCTCTTCTCGATGTGATACGGAAGATTTAGCGCTGACAAAAACTTGGGAGAAAAAATTTCctagaaaagaataaaattcgCTGTGATCGTTTAAGAAACAGGAGCTGGAAACGTTGTAAAACGTGTGGCAGGAGAGTTATTGCCTCACAAAATATACCAGCCAATCAGGTTCTAGTATGCAAATGAGTTAGTCAGGGTCTAGTATGCAAatcactgtgttactgtgtcacaaaatataaaagccAATCAGGTTCTAATGTGCATGAAACAAAAGCCAATCAGGTTCTAGTATGCAAATGAGAGGGTTACTTCATCACAATTAGGTTTCAGAATGCAAATAATAGTGCTTCTGTGTCACAAAATATAAGAACCAATCAGGTTCTAGTATGCAAATGAGCCAGTCAAGTTGTAGTAtgcaaatcagccaatcaggttgtACTGTGAGAGTGTTACTGTGCCACAGACTATAAGAACCGGGTAAGAATCAGGTTGCAGTATGATAATGAGCCAATTACTTTATAGTATGCAAATGAGAGTATTACTGTgccacaaaatataaaaaccaATCAGGTTCTAGTATGCAaaagagccaatcaggttcgAGTATGCAAATGAGAGTGTTTCTGTGCCACATTATATAAGAACCAATCAGGTTCAAATTTGCAAAAGCTACCCATGTAACTCTGGTTtaacaatttgcatattcacacattataaatttccttttttgtcaaaaacaatttaatatttaaaactaaattttGTGTGACTTTAAAATTCCTAGTTTAATGTTAACCTTAGTATTATTTGATATGATGTAAAGTTGTGCACACTggaacattatttacattttaattgttttactCTCTTAACCTGCtacttttataatttttatcatttttataaacattccCCGAACATCTACCGAAATACGTTTTGTTTTCACATCGAAAAAGTGTTTGCTTTcctcgtttttttttgttcgtaCAAATCGTTAGAACACGTTTTTGTTTAACGTCCTGAAACTGTTACTATCCATTTTTCATGTAACTATTGTAGAAGCGTAGCTAACAATTTCTGTCCTCCTGCTGaactactaaaaaaataaatagatttaaaaaatgaagacatGCTGTAGTTCATTCCGgtgctttatggtgtgtgtgtgtgtgtgtgtctg

Function

GO:

id name namespace
GO:0061448 connective tissue development biological_process
GO:0051216 cartilage development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327627 lncRNA downstream 52578 3915328 ~ 3916117 (-) True G276388
TU327625 lncRNA downstream 54706 3913539 ~ 3913989 (-) True G276387
TU327626 lncRNA downstream 54706 3913539 ~ 3913989 (-) False G276387
TU327616 lncRNA downstream 63764 3901262 ~ 3904931 (-) False G276384
TU327618 lncRNA downstream 65797 3901262 ~ 3902898 (-) True G276384
TU327671 lncRNA upstream 27927 4070448 ~ 4071037 (-) True G276420
TU327672 lncRNA upstream 27927 4070448 ~ 4142948 (-) False G276420
TU327676 lncRNA upstream 27927 4070448 ~ 4142948 (-) False G276420
TU327678 lncRNA upstream 27927 4070448 ~ 4142226 (-) False G276420
TU327710 lncRNA upstream 81944 4124465 ~ 4125581 (-) True G276447
XM_034313185.1 mRNA downstream 23394 3919302 ~ 3945301 (-) True kdm7aa
XM_034313181.1 mRNA downstream 62042 3857515 ~ 3906653 (-) True kmt2e
XM_034312987.1 mRNA downstream 157079 3798341 ~ 3811616 (-) True orc5
XM_034313225.1 mRNA downstream 185912 3760116 ~ 3782783 (-) True golgb1
XM_026909954.2 mRNA downstream 212838 3738884 ~ 3755857 (-) False hcls1
XM_026909970.2 mRNA upstream 2185 4044706 ~ 4060514 (-) True cd36
XM_026909919.2 mRNA upstream 288739 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA upstream 288739 4331260 ~ 4343545 (-) True LOC113523868
XM_026912198.2 mRNA upstream 741607 4784128 ~ 4792797 (-) True psmc2
XM_026922701.2 mRNA upstream 854749 4897270 ~ 4917780 (-) True gys2
TU327549 other downstream 231618 3736130 ~ 3737077 (-) True G276340
XR_004580002.1 other downstream 396769 3565035 ~ 3571926 (-) True LOC117599595
TU327175 other downstream 429952 3536997 ~ 3538743 (-) True G276075
XR_004579995.1 other downstream 474679 3430190 ~ 3494016 (-) True lin7a
TU327062 other downstream 674905 3285837 ~ 3293790 (-) False ppp1r12a
TU327682 other upstream 39757 4082278 ~ 4091863 (-) True G276421
TU327840 other upstream 255339 4297860 ~ 4300524 (-) True G276530
LOC117599555 other upstream 315018 4357539 ~ 4457121 (-) True LOC117599555
LOC117599551 other upstream 318811 4361332 ~ 4361942 (-) True LOC117599551
LOC117599554 other upstream 343821 4386342 ~ 4387104 (-) True LOC117599554

Expression Profile