RNA id: TU327788


Basic Information

Item Value
RNA id TU327788
length 634
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G276503
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4358625 ~ 4587096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGATGAGACTTTAACATCAACTCACGgcctcacacacttcattttataCTAATTCTACACCactttacagcatacaaacacaatctatgtttctcttcaggatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGTGTGAATAATGGTAACTACCTAGCCTGGTACCtgcagaaacctggagaagctcctaaactcctgatctaCAGTGCTACTAGCTTACAGTCAGGGACtccagctcgtttcagtggcagtggatctaATACTGActtcactctgaccatcagtggagtccaggctgaagatgcaggagattactactgtcagagtgaACATTATATCAGTAGTAGCTAtgtgttcacacagtgttagagcGTGGTACAAAAACCTCGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctgagggggaggatgtgatacagcacaatgacacacactgtggacgagagaaaacacaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327859 lncRNA downstream 64743 4333555 ~ 4334544 (-) False LOC113523868
TU327824 lncRNA downstream 76606 4278059 ~ 4322681 (-) False G276515
TU327822 lncRNA downstream 76606 4320491 ~ 4322681 (-) True G276515
TU327849 lncRNA downstream 90250 4308588 ~ 4309037 (-) True G276538
TU327765 lncRNA downstream 143343 4255200 ~ 4255944 (-) True G276497
TU328119 lncRNA upstream 243545 4798659 ~ 4799157 (-) True G276749
TU328127 lncRNA upstream 246793 4801907 ~ 4844371 (-) True G276755
TU328136 lncRNA upstream 261994 4817108 ~ 4841754 (-) False G276761
TU328138 lncRNA upstream 261994 4817108 ~ 4876792 (-) False G276761
TU328142 lncRNA upstream 261994 4817108 ~ 4862107 (-) True G276761
XM_026909919.2 mRNA downstream 55742 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA downstream 55742 4331260 ~ 4343545 (-) True LOC113523868
XM_026909970.2 mRNA downstream 338773 4044706 ~ 4060514 (-) True cd36
XM_034313185.1 mRNA downstream 453986 3919302 ~ 3945301 (-) True kdm7aa
XM_034313181.1 mRNA downstream 492634 3857515 ~ 3906653 (-) True kmt2e
XM_026912198.2 mRNA upstream 229014 4784128 ~ 4792797 (-) True psmc2
XM_026922701.2 mRNA upstream 342156 4897270 ~ 4917780 (-) True gys2
XM_026922781.2 mRNA upstream 370602 4925716 ~ 4938813 (-) True ldhba
XM_034313267.1 mRNA upstream 399177 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA upstream 399177 4954291 ~ 4965093 (-) True slc25a3a
LOC117599554 other downstream 12183 4386342 ~ 4387104 (-) True LOC117599554
LOC117599551 other downstream 37345 4361332 ~ 4361942 (-) True LOC117599551
TU327840 other downstream 98763 4297860 ~ 4300524 (-) True G276530
TU327682 other downstream 307424 4082278 ~ 4091863 (-) True G276421
TU327549 other downstream 662210 3736130 ~ 3737077 (-) True G276340
LOC117599581 other upstream 21356 4576470 ~ 4577038 (-) True LOC117599581
LOC117599580 other upstream 31142 4586256 ~ 4586992 (-) True LOC117599580
TU327987 other upstream 179817 4734931 ~ 4738999 (-) True G276650
XR_004579951.1 other upstream 413139 4968253 ~ 4984315 (-) False tmpoa
TU328176 other upstream 415200 4970314 ~ 4972245 (-) False tmpoa

Expression Profile