RNA id: TU327793


Basic Information

Item Value
RNA id TU327793
length 467
RNA type TUCP
GC content 0.48
exon number 2
gene id G276503
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4358625 ~ 4587096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgGCAGCCCATGCTTCAGTGCTctgcgagtgtttatagccctgtgactttaacacttcatgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGCGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGGGTGTATAGTGGTAACAGCCTACACTGGTACCtgcagaaacctggagaagTTCCTAATCTCCTGATCTATGATGCTACTAGCTTATATTCAGGGACTCCAGCTCGTTTCAGAGGCAGTGGATCTGATACTGACTTCACTCTaaccatcagtggagtccagactgaagatgcaggagattactactgtcagagttaccATTATATCAGTAGTAGAAATGagttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327891 lncRNA downstream 35372 4449882 ~ 4502862 (-) True G276570
TU327796 lncRNA downstream 55240 4429498 ~ 4482994 (-) False G276503
TU327896 lncRNA downstream 55669 4466273 ~ 4482565 (-) False LOC117599578
TU327783 lncRNA downstream 113692 4358625 ~ 4424542 (-) True G276503
TU327870 lncRNA downstream 123118 4400123 ~ 4415116 (-) True G276556
TU328119 lncRNA upstream 253528 4798659 ~ 4799157 (-) True G276749
TU328127 lncRNA upstream 256776 4801907 ~ 4844371 (-) True G276755
TU328136 lncRNA upstream 271977 4817108 ~ 4841754 (-) False G276761
TU328138 lncRNA upstream 271977 4817108 ~ 4876792 (-) False G276761
TU328142 lncRNA upstream 271977 4817108 ~ 4862107 (-) True G276761
XM_026909919.2 mRNA downstream 194689 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA downstream 194689 4331260 ~ 4343545 (-) True LOC113523868
XM_026909970.2 mRNA downstream 477720 4044706 ~ 4060514 (-) True cd36
XM_034313185.1 mRNA downstream 592933 3919302 ~ 3945301 (-) True kdm7aa
XM_034313181.1 mRNA downstream 631581 3857515 ~ 3906653 (-) True kmt2e
XM_026912198.2 mRNA upstream 238997 4784128 ~ 4792797 (-) True psmc2
XM_026922701.2 mRNA upstream 352139 4897270 ~ 4917780 (-) True gys2
XM_026922781.2 mRNA upstream 380585 4925716 ~ 4938813 (-) True ldhba
XM_034313267.1 mRNA upstream 409160 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA upstream 409160 4954291 ~ 4965093 (-) True slc25a3a
LOC117599579 other downstream 19251 4517902 ~ 4518983 (-) True LOC117599579
LOC113525246 other downstream 23617 4513931 ~ 4514617 (-) True LOC113525246
LOC117599577 other downstream 30065 4507439 ~ 4508169 (-) True LOC117599577
LOC117599585 other downstream 36914 4500397 ~ 4501320 (-) True LOC117599585
LOC117599584 other downstream 42662 4494965 ~ 4495572 (-) True LOC117599584
LOC117599444 other upstream 9488 4554619 ~ 4555095 (-) True LOC117599444
LOC117599581 other upstream 31339 4576470 ~ 4577038 (-) True LOC117599581
LOC117599580 other upstream 41125 4586256 ~ 4586992 (-) True LOC117599580
TU327987 other upstream 189800 4734931 ~ 4738999 (-) True G276650
XR_004579951.1 other upstream 423122 4968253 ~ 4984315 (-) False tmpoa

Expression Profile