RNA id: TU327794


Basic Information

Item Value
RNA id TU327794
length 500
RNA type TUCP
GC content 0.49
exon number 3
gene id G276503
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4358625 ~ 4587096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacaaacacacacactttgcattgGCAGCCCATGCTTCAGTGCTctgcgagtgtttatagccctctgactttaacacttcatgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGCAGAACCAGTAGCAGAGTGGAGAGTGGTAACTGTCTCGCCTGGTACCtgcagaaacctggagaagctcctaaactcctgatctaCAGGGCTACTAGCTTACAGTCAGGAACTCCAGCTCGTTTCAGAGGCAGTGGATCTAATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagtgaACATTATATCAGTAGTAGCTAtgtgttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327796 lncRNA downstream 17855 4429498 ~ 4482994 (-) False G276503
TU327896 lncRNA downstream 18284 4466273 ~ 4482565 (-) False LOC117599578
TU327783 lncRNA downstream 76307 4358625 ~ 4424542 (-) True G276503
TU327870 lncRNA downstream 85733 4400123 ~ 4415116 (-) True G276556
TU327859 lncRNA downstream 166305 4333555 ~ 4334544 (-) False LOC113523868
TU328119 lncRNA upstream 211563 4798659 ~ 4799157 (-) True G276749
TU328127 lncRNA upstream 214811 4801907 ~ 4844371 (-) True G276755
TU328136 lncRNA upstream 230012 4817108 ~ 4841754 (-) False G276761
TU328138 lncRNA upstream 230012 4817108 ~ 4876792 (-) False G276761
TU328142 lncRNA upstream 230012 4817108 ~ 4862107 (-) True G276761
XM_026909919.2 mRNA downstream 157304 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA downstream 157304 4331260 ~ 4343545 (-) True LOC113523868
XM_026909970.2 mRNA downstream 440335 4044706 ~ 4060514 (-) True cd36
XM_034313185.1 mRNA downstream 555548 3919302 ~ 3945301 (-) True kdm7aa
XM_034313181.1 mRNA downstream 594196 3857515 ~ 3906653 (-) True kmt2e
XM_026912198.2 mRNA upstream 197032 4784128 ~ 4792797 (-) True psmc2
XM_026922701.2 mRNA upstream 310174 4897270 ~ 4917780 (-) True gys2
XM_026922781.2 mRNA upstream 338620 4925716 ~ 4938813 (-) True ldhba
XM_034313267.1 mRNA upstream 367195 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA upstream 367195 4954291 ~ 4965093 (-) True slc25a3a
LOC117599584 other downstream 5277 4494965 ~ 4495572 (-) True LOC117599584
LOC117599583 other downstream 22482 4477687 ~ 4478367 (-) True LOC117599583
LOC117599578 other downstream 33223 4466061 ~ 4467626 (-) True LOC117599578
LOC117599557 other downstream 43805 4456307 ~ 4457044 (-) True LOC117599557
LOC117599556 other downstream 51189 4449021 ~ 4449660 (-) True LOC117599556
TU327987 other upstream 147835 4734931 ~ 4738999 (-) True G276650
XR_004579951.1 other upstream 381157 4968253 ~ 4984315 (-) False tmpoa
TU328176 other upstream 383218 4970314 ~ 4972245 (-) False tmpoa
TU329048 other upstream 1394042 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 1395196 5982292 ~ 5984564 (-) True G277575

Expression Profile