RNA id: XM_026909919.2


Basic Information

Item Value
RNA id XM_026909919.2
length 7343
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC113523868
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4331260 ~ 4343545 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccagcagctcaggagtgatgctcatctggtccagagcgtaggggggtctggatcaccggcagctcaggagtgtagctcggcagaaagaaCTCAGCATCCGTCCATCTACCTCCACTAAACAAACTCGCCTTGAGTCAGTGTCAAATGTAAACTAGGCCCCTCTGCATCACAGGCCATATCACAGCACCCcgatgtggattattttcctataacagcacaccctattgtgttttattctttacgtATTGTTCTGGATGTGACATCGGAAAGAGATGCGCCCTTTCAGAGACATCCTGGCTTTTTGTAAAGCTGTGTCAAGCAATGTAAGCTCATccttcccactagactgGTCGGGCCATTCCAGATTCCAGTCCGGGCCTTCCTGCCGTGCCTTAGACACTGCCATCCATCAGCCTTGTGTGCCGCTTCCGCCCCAAAGATGACGTCATCAAAGGGCGACAGTATTCAGAGGCGACGAAAGCCAGTGTCCCTAGCTTCGAATTGTTGAGCTTAGATTGTGTTCGTGGTTGTGATTGTTAAGCCATTTCGTGCTTTTGTGTGAAACttctgttttttggtttttttaactGTGCTATCCTGCTTACGAGTTTGATCTGTGCTTTGGGTTTTTGTCCGCTGCCAAGATTTGTAAATCCTGTTTGTAAATATTGACACTGTATATGTTCACCAGTAGACTGCCATTTCTTTTGAGTGTGGGTTTTGGTCTCTGTTTTGATAAGGGAAGAGTTAGGGAAGAGGattgtcttttgttttgtttttttcattgttcTTTTTAGggtcatggggcacctggagcctatctcaggggaCTCAGGGTACAAGGTGGGAAACACCTTAGACATGGTACCAACCCACAGCAGGACACGATTGCACACACAGGGCAATTTACAGATGCCAACCAGCCTATAACACaggtctttggactggggaggaaaacAGAATACCCACAGGAAACCCCCGAGACATGCAGAACAGAGTTACAGGAAGTTCATCCGACTCAGGAGAAGACATGACCCAGATGCTTCCTAATGCAGCAGAAGTTTCTGACTCAGAAACACCTGTCTCTCCAATCATCTCCAACTTCCTGGAGCGTCTGACTGATCAaCAATTACATGTGATGAGAGAGGCAACGAGTGATCCGCTCACAAGAGaagaaatgcacaaaatattgAAGAAAGTTGTGAAGACTGTGACAGAAATGGCACTAAAAATCATCATTCCAAACATGGATGAAATTCTGAACGTGGATCCTTCATTCCCTTGCTCTTCAGAACCTGGTTCCTCACATCAATCTGTTCTATCTCCTTCTAACAGGCATGAGCTCAAGGACACAGTGGACTCAGGGTCTCACTCCACGTTAACTAAGGATGAGGACCTGGAGATTGATAGTGAACCAGTGGACGTGCTTTTGGAAATAACAGAGGACAACATTCCGTTGAGAGACGATGAAAGCCAACAACAGTCAGTGAGTGGACTCCACAGTGGCTGGTCCTCAAACAGTTCCTCTGAAATGAATGCCGCAGTCGTTAAAGAAGAGTTTCAGGAGATTATTTCTGGCGCAAGTAACATGGCACTGAGTTCAGACACAGGCAGTCCGTCACCACCATTTCATATCCTGCCTAAGTCCAAGGGAACTAACTCGGTGACTAAGGTTGTCACAAATGCTAACATGGCACTGAGTTCAGATTCAGGTAGTCAGTCACCACCGTTTCATATTCTGCCTAAGTCCAATAGTACTAACTCTGTTTTAGTGACTAAAGCTGTCATGAATGCCATCGTCAGTGCCATGACTAACCGCCTCGATGAAAAGGAAGATTTGCGCATTTTGCAGCTCCTTACTAGTGTTGCCCGAAAACTCGAGGTCCTGTCATCTGCTTCTAGTTCAGAGACACTCTTTAAATCAGAAAGTGAAAGCGATTCGTCTGACTCACACCCACTAAATACTCACACACTTTCCAGTAAGAACTTCCAGATAAGAGCTTCAAAGGCAGTTAATGATATTCTTATTAAGACCACCAATAATTTGGATCCTAAGGACGATCTCCACTCCAATGTATTGGCTGATGACTTGAGCACTGCTTCTAATTCAATGGTTAAAACCTTTGTTAATGAGATTACTGCAGCAGCACAAGAACTCATACAAACATCTCAGTCTGGAGATCTGACTACCGACAAGCCAAGTGCTAAACCAAGTAAATCCTCAACAACCGCTCAGGATGATAGCAACAGACTTTTGTCCGCAGTTAGGAGAATTTATGGAAGCATGCAGAATAAAGTTGTAAAATCTTTCTCACAGCTGCTTGCTCAGCCAAGCACTAAGATAGTCAAAGTTTTAACATCCACCAGGAGCAGTCCATCACCTCCTAATGAGGTTGCGCAAGCAAGCCAGAGTGATTCACACATATTAGCTGCCAGTCGCTTGAATGCATTTAAGCCCTGGAAGACCTTAAGTGACAGCTTGCAAAGGCTTGTCACCCTTAATGTCAATCGAGAGCAGATCCAACAGTGCACAAAGGACATACTACAGGAGATAATCACTGTTTATATATCAGAAGAGCACAAAAccaaagagaaagaagagattgcaactgaaaaatattcattcaaaGCAACACAATCTCGTTCATATGTGTCCCTTGTTGCTGAAAGGGTTGTGGATGATATGTTATTCAGTCTAGTGCAGTTCAAATGGCCTGATGGCTTGTCAGGAAGTGGCAGTGATGCAGATGATAATTTTTCAGATTTAGAGACGAATGTATTGACGACTAGTACGGAAGAGAACATTTCAGCCATCCAGAAAATTTCCAGCGAAGAGTTTAGGACTGAGGCTTCCAGGCTTGTGAGCGAGGTCTTCTCTCAATCAATCGTAATTGCAGATGCTGACATTCCTGAGGCAGACCTGGATACTACTGCTTTGAAAATTGTGGAGGAATTTGTGACAGACATTCGTGACCTATTGGGAAACATTGCACAATCTCCACAACTGGCAGCTGATATTTGTGAGAATTCATTCTCAGGTTCCTTGCCTTCCAGTGAGGACATACATGTGCTTCACTCCCTAGAACAGACAGACTCTGGATCTTCAAAGGGAAGTACAGAGTCCCGTCCTAACATCTCTGAGGTAGACTTGTGGTCATTTGTGCATAATCTGTATGATAGTGTGATGAGCCAGGTCAGTGAATTTTTGTTCAAGCATCAGCAGAGAGAAGCTGAAGTAAGAAAAGTTGTTGCTAATGTATTCTTGGCTATTGATGAGCAATTGCAATCATCACAAGAAGCACAGCATGCACGCAATGTGATTGGATCCATGCAGAAAAATGTTGGCGTGGACAAACCTCCATCAGCTCATACACTAAAAAGTATAGAGCCAGAGAGACTCTGTTCCACAGCATCATCCAGAACATTGGTGTCAAAGGACAATAATTTGAACTGGAATGAAGTAACAAATCCTGTGACTCCTTATCCATCGTTATCTTCTCTAGGTAAGAGATCACCCTGCTTAAAAAGTTCACTGAGAAGCTTAGACAAGGAAGTGCGACCCAAGACTCGAAGCAGTGACGTGGTTTCAATGACCACATTAGTGGACACCTTGATGGCCTCTTTGGATTTAGAACATGCTGAGCATTTTAGTTCTCTGGAGAATTTATTTGCAGCAGCAAACAGATCTGGTGAAATGAATTCAAAAGGAGCCCCTCACAAGTTCACACTCAAGTTTGTAGACATGATCCAGCAGCTAATAAAGCGTAGAATGACTCCCATCAAGAGCGTCTCAGATTCTGCTGTTGAGACAAGAAGGAGACAAGTAAATACTGACATGCAGCAGTCATTGGCATATGAATTTCTATGCGAATTTGCTGAAGAGTCAGTAAAACGCTTGCTTACTTCCTGTATTTTGCCACCACCAACTCCTGCCCGCACACAAGAACTTCCAACCATGCCCTTTGTCACACCTGAGAATTTTGACTTCTCAAGACCTCTGTCTGAGGTGTACACTGATGCGACAGAGCTGTTGTCGAACATTGTCTGGAAGCAAGTAATGGAGCACCTGTCAGTATCATTTGATCAGTGTGTGGATGAAATATTCAGCATCTACAGTGAGGACCTGCGCTCTATTGAGGACCAAAAGTTAGATACGACAGCGTCCTGCTCCGAATTGCATCCAGCACCACAACAAAGCATGGAGACTATTTCAAATGCTGAGAAAACACCAGAAGTTGCCTCATACAGCTGTGAAAAAGCCAAAACCTTTTCTTTGACTGCTCTATGTCACTGTGTTAGAACAATATTACTCAGGATCCAGCAGGAATCATCAGCTGAGGTATCTCCATTCTTATATGAGACCAGTGATGAGGTGCAATTAATTACCATTGCTGTCCTGGATGTTCTGAAAGGTTGCAGGGGTGTGAAGCTGAAGGATGATGAACACGAGCCTAAAGAGCTTCAGAGCAGGCTCATtgacacagtgtacacacaggTGCTACAGAGAATCGGCTCTCAGAGTGATCTGTTTGAGGCATTAAAGTCCCAGAGTCCAGAGCTGACTGGATCACTGGCAGTCTCGATCGTCAGGACACTTCAGAGCATGAATCCTGAAGACATctacattacatcatcacactcTCGTTCACCTGCAAATGACACAGAAGAACATCTGGAATTCAGCCAGGCCATTAATGACCAAGGTCCATCTGCAGTGGAGATCAAAAAGGAACTTTTCCTCAAGCATCCAAAACTGAAGAATCTCTTCAAGAAATTGAGAAAAGGAAAGACGGGAAGTTCTGACTCTCTGGACCAGGAGCAGCACTGTTCTACTGATGCCGATATGAGTTCAAACATTGCAAATTCCAAAAGGAGAAGCGGAGGAAGCGGTCCATCTTTTCCCAGTTAGAGGTTAACTACTCAAAGCTTTAGTTAAAACACTGCACACTAATGGCCCCTGGTGTtcaaaaatattaaaggaaaagtccacccttGCACAtcaatctttataattaacatgtgatcttcaacgACCATGATTTATTAAGTTatagcattttttattattattttttgacagACTAAAGCACTACTGTGTCACTCTTTTTATATTGAGATGAAACAAGGGCCAAATCAAACTAAAGGGATAAATAGTCATTGGGATAATGTAGGGAAATTAAAATAGAATGTTGAAagttaactctttttttttggtttaaacttctttgattgatatttttattttcctacattgtccacaatgctgtttgactaGCTGATagtgatagtggtgcagtgagaTTTAGCCCTTGTTTCATCTTTACATAAgaagagtgatgcagcagtgctttagccTGTCCAGCACTCTTAtgtcctcatctgtacactctgctcaaacagaacAGCTTCCAAAGcatcaactttcatgctaacacATTGTGCTCGTCAACTAGCCAAGCCGAGCTGTAACTCAGTGTTGTATAGCTGAATTGCATTCTtggactttgagtccagcatttgcaCCAATGTCTCCGCTTCATTTAttctggatttctcattaatgtgacatcactggaaaatggtaaGTAAGAAACGAAGCTCttggtcctttttttttagaagcaAAATCTGACCATTCTCACTTATGTTTGACAGCAATTCTTTTAACCTATAAAATGTCATTGTGACATCAGTGTGACACCCTGTGACATCGTCACAGGACATAACCGCTGTCTTCTCACCAGAATAACAGGAAATACACCACAAACTATATATTAGCAACAGAATCACTCATTGGCTTGGTCTTCACGTGCAAAGATTACTGTGATTTGAGTCTGTGGTGACAGCATTGGGTTCTCTGGTGGCTCAGCAAGCCAATTGAGGGCTGCTGCCTCCTTTGTTTTTCTACGTGTCTCCTCCACTGCTGCTCACCAAGAGGCCTTGTAGATCTTGGCAGCGTGCTTGGTGGCTGCAGACCAGTGTGATCTATTTAGCAGCCAACTGTTCACAGAACTGGTGGTCGATGTCGGATTGGCTGAGCTGGCTGGCGTTTCAGCTGGTCCTTGAAGCACTAACGTGGGGCTCCTTTGATACTCTTCCCCTCACACAATTCCCCATATAAGACGGCTTTGGGCATGCAGGTGTCTTCCTTACGGGGCGACGTAGCCAGCACCATGGAGCTGCTTTGGCAGCAGCATGGCCTCAACGCTAGGCAGCTCGGCTCTATCCAGGACATTATTGTTGGTAACGTAGGTCCTGCCATCTAATGATGGACCACAGACAGCGTTGGTGGAGTTGCATGTGCTTCCTCTAGAGTACCCAGGCTTCTGCTCCATAGAGTAGGGTCAAGATGATGGGAGCCCTGTAGATATGGATCTTGGTGGACATGCACAGCAATTATTCCCTCCAAACATGCTTCTGGAGGCAGCCAAAGGAACTGCTGGCTTTAGAGAGGCGGTTGTTGATGTCCTTGGACACCATTTCTTCATCGGCGCTGACACTCCCAAGGTACATGAAATGATCCATAGTGTTGAGAGGGTGCCCGTTGACGTTGATCTGGGGAGGGATGCAGTCCAAATGTGGAAGCTTCTGGTACATCACTTCCATTTTCTTCAGACTGGCGGTCATACCAAAGGCCACTGCTACGTGGGCGAAGTGGTTTACAATTATCTGCAGAGCCTCCTGTGTGTAGGAAAAGAGAGTACAGTCATACGTGAAGCGAAACTCCAGGATCAACCCATCGAAGGTCTTGGTGCATGCGAGAAGGTGGCAAAGGTTGAAGATTCTGCCATCTGCCAGAATCTAATGTAGAGTCCCTCCAATAGGTCCTCCTTGGCTTCTGTGATCATCAGGCTGAAGAAGATGGCGAAAAGTGTGGGAGCAGAAGGACAGAGCCTTGCTTGACGCTATTGTCGATGGCAAAAATTTCAGACAGGTCGCCTTTGTGTTTCGCTTGTCCCCTCTGGCCTTCATGTAGCTGTTTCAGTAGGGTGAGGAATTTCGGCAAGCATCCCAGCTTGAACAGGACTGTCCACACTCCGCCTCCACTCGCTGTGTCAAAGGACTTGGTCAGGTCTATAAACACTGCTAATGAGCTCCGTCTACCCATGTTTGGCATGAGAGTTGTACTTCTCCTAGAATGGCTGCCAGAGAGAGCCCAGTCTACGATTAACAgaaacactaaacacatcacaaatatttcagtataaacttCTCATTTGTTTTAGGGTGGagtttaatgttaataaatttcTCTGACTTTATGaatgatgtttttaatttaaatctgtATTACGTCTGTGTTTTGTTGACttgcaataaatatattttatactgtctgtggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327824 lncRNA downstream 8579 4278059 ~ 4322681 (-) False G276515
TU327822 lncRNA downstream 8579 4320491 ~ 4322681 (-) True G276515
TU327849 lncRNA downstream 22223 4308588 ~ 4309037 (-) True G276538
TU327765 lncRNA downstream 75316 4255200 ~ 4255944 (-) True G276497
TU327672 lncRNA downstream 188312 4070448 ~ 4142948 (-) False G276420
TU327783 lncRNA upstream 15080 4358625 ~ 4424542 (-) True G276503
TU327788 lncRNA upstream 55742 4399287 ~ 4555114 (-) False G276503
TU327870 lncRNA upstream 56578 4400123 ~ 4415116 (-) True G276556
TU327871 lncRNA upstream 70914 4414459 ~ 4557257 (-) True G276557
TU327796 lncRNA upstream 85953 4429498 ~ 4482994 (-) False G276503
XM_026909970.2 mRNA downstream 270746 4044706 ~ 4060514 (-) True cd36
XM_034313185.1 mRNA downstream 385959 3919302 ~ 3945301 (-) True kdm7aa
XM_034313181.1 mRNA downstream 424607 3857515 ~ 3906653 (-) True kmt2e
XM_034312987.1 mRNA downstream 519644 3798341 ~ 3811616 (-) True orc5
XM_034313225.1 mRNA downstream 548477 3760116 ~ 3782783 (-) True golgb1
XM_026912198.2 mRNA upstream 440583 4784128 ~ 4792797 (-) True psmc2
XM_026922701.2 mRNA upstream 553725 4897270 ~ 4917780 (-) True gys2
XM_026922781.2 mRNA upstream 582171 4925716 ~ 4938813 (-) True ldhba
XM_034313267.1 mRNA upstream 610746 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA upstream 610746 4954291 ~ 4965093 (-) True slc25a3a
TU327840 other downstream 30736 4297860 ~ 4300524 (-) True G276530
TU327682 other downstream 239397 4082278 ~ 4091863 (-) True G276421
TU327549 other downstream 594183 3736130 ~ 3737077 (-) True G276340
XR_004580002.1 other downstream 759334 3565035 ~ 3571926 (-) True LOC117599595
TU327175 other downstream 792517 3536997 ~ 3538743 (-) True G276075
LOC117599555 other upstream 13994 4357539 ~ 4457121 (-) True LOC117599555
LOC117599551 other upstream 17787 4361332 ~ 4361942 (-) True LOC117599551
LOC117599554 other upstream 42797 4386342 ~ 4387104 (-) True LOC117599554
LOC117599550 other upstream 55736 4399281 ~ 4399935 (-) True LOC117599550
LOC117599559 other upstream 59966 4403511 ~ 4404115 (-) True LOC117599559

Expression Profile