RNA id: TU327891


Basic Information

Item Value
RNA id TU327891
length 1318
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G276570
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4449882 ~ 4502862 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATAGTTTCATTTCTCCCAGAATAGAGCAGAAACTTCACCAGATGTTCAACTTCCTTCAGTCaaactcactgaagcacaacacacagcactgaatctacagctaatcacactctctcatcacactgatcatcactattaactctaataaaagaacagaCAACGTCCaaaattcagctttatttcagcaaaaactacaggaagagcaacaggacagtgaacagagtaaagacagaaatgccAGCATTGTGTAGAATTGAAACTCTATTGTAGATGGATCAGAAGCAGCTCTATGTTAAACTCTATCCACTAGCCTTCACACTGACTCTTTCTGAACGTGACTGGATGATTGACGTTGTTATGGGAGACCTTACAGCTGaactcctcccccttttcccagaggtctttgctgagggtcagggtgctgctgcGGCTGTAACGGCcgttcttctcttcttctgagCTAGTCAGAACCCCGTTCTTCACCTCTGAGCCGTCCACTGTCCAGCTAACCAGCGCCCCCTGTGGAGAGTAGCcagacagcaggcagagcagcgagGCCGATTCGTCACACAGCTGCAGAGGGGACGGAGAGAGCAGAGACACGGACGGCTTCACCACGGGACCCGCTGGagaggagaaacacacacacacatcatacacacgtcattcacacacaattagaaatgattatgaaatatttctgtaactttgtGCAACTGACTGATCTTACAAAGTAATTAAGTCTAATAAAGTCTGACTTCATGACTGAGTTTCACTGAGTACTTTATTATTTGACATCAGTTTCAGTTcatagacaaaacaaacaatttccacactgtaatttatctgagaaaaataatttttcataacAAGTGTTATTACTTTATAGTTCAAACCTTCAGCATATTTAACTGCAGCAAATACAAATGTAGCTgattacagaaatattcattgtttaacacaaacacacacagcagctttcaTCTGGATTTTACATCAGCACAAagtaactatatttattaaatgtttattatagagTAACTGCAGAGTTATTGCATGTCGAATATATAGCAAGTgtgtaattattacatatttaacaaaaataattgtatatttcTTGAATGTTGAAGAACATTGATATGGGATCTGTTCTGATACTGAAACGTATTCCTCATCAGagcataataatacacaataaaaatcaattatgcaattataaatgtaaataatctgcttagttaaagtttatttattcatgtaattaGTAATGAACTAAATGGATTTTGtgttaaaagaagaaaacacacttaCTGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327783 lncRNA downstream 25340 4358625 ~ 4424542 (-) True G276503
TU327870 lncRNA downstream 34766 4400123 ~ 4415116 (-) True G276556
TU327859 lncRNA downstream 115338 4333555 ~ 4334544 (-) False LOC113523868
TU327824 lncRNA downstream 127201 4278059 ~ 4322681 (-) False G276515
TU328119 lncRNA upstream 295797 4798659 ~ 4799157 (-) True G276749
TU328127 lncRNA upstream 299045 4801907 ~ 4844371 (-) True G276755
TU328136 lncRNA upstream 314246 4817108 ~ 4841754 (-) False G276761
TU328138 lncRNA upstream 314246 4817108 ~ 4876792 (-) False G276761
TU328142 lncRNA upstream 314246 4817108 ~ 4862107 (-) True G276761
XM_026909919.2 mRNA downstream 106337 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA downstream 106337 4331260 ~ 4343545 (-) True LOC113523868
XM_026909970.2 mRNA downstream 389368 4044706 ~ 4060514 (-) True cd36
XM_034313185.1 mRNA downstream 504581 3919302 ~ 3945301 (-) True kdm7aa
XM_034313181.1 mRNA downstream 543229 3857515 ~ 3906653 (-) True kmt2e
XM_026912198.2 mRNA upstream 281266 4784128 ~ 4792797 (-) True psmc2
XM_026922701.2 mRNA upstream 394408 4897270 ~ 4917780 (-) True gys2
XM_026922781.2 mRNA upstream 422854 4925716 ~ 4938813 (-) True ldhba
XM_034313267.1 mRNA upstream 451429 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA upstream 451429 4954291 ~ 4965093 (-) True slc25a3a
LOC117599556 other downstream 222 4449021 ~ 4449660 (-) True LOC117599556
LOC117599553 other downstream 10122 4439236 ~ 4439760 (-) True LOC117599553
LOC117599558 other downstream 19929 4429054 ~ 4429953 (-) True LOC117599558
LOC117599560 other downstream 25189 4424194 ~ 4424693 (-) True LOC117599560
LOC117599559 other downstream 45767 4403511 ~ 4404115 (-) True LOC117599559
LOC117599577 other upstream 4577 4507439 ~ 4508169 (-) True LOC117599577
LOC113525246 other upstream 11069 4513931 ~ 4514617 (-) True LOC113525246
LOC117599579 other upstream 15040 4517902 ~ 4518983 (-) True LOC117599579
LOC117599582 other upstream 24926 4527788 ~ 4538824 (-) True LOC117599582
TU327793 other upstream 35372 4538234 ~ 4545131 (-) False G276503

Expression Profile