RNA id: TU328142


Basic Information

Item Value
RNA id TU328142
length 1505
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G276761
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4817108 ~ 4876792 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCAGAACCATGATTGAAGCTTCAACTTTATTTTGGATGTTTCATAAATCCAAAAGCCTAAAAGTAGCCAGGTAGAATGAAATCAGATTAAATCTGAAACATCATCATTTTGAGAACAATAAGGagtcaataataaaaataatttcagaacaAACACCAGAACCATGATTGAAGCTTCAACTTTATTTTGGATGTTTCATAAATCCAAAAGCCTAAAAAGTAGCCAGGTAGAATGAAATCAGATTAAATCTGAAACATCATCATTTTGAGAACAATAAGGagtcaataataaaaataatttcagacaTGAGTACGACTGACAACTTTCCAATCTGTTCCTCCAAAAACAGACTTCACATACATCATTCTCAGAAATGTGCATTAAGATTACTCTTAACATACATGTGCttggttaaaaataaagtgaaatgtaGAACGATGCTTCAGGTTATTTTGTCTGGGGCAGTGCCATCAATTAATTACACTTCCTTTAtgtttcatttgatttgatCTATATCAAAAATCACGTATCCTTTCATTTCTACTGAATTTCTTTCGCACAGATCAGAAGTAAACTTTGAATAATTATGGGACctaaagagggaaaaaatgatgGAGGATTTAAAAGTAAGTGCTTTCAGGTGGGTTGCAGCATTCATGGTGAAATATCAAGTGTTCTCCATTAAGGCAAatagcaacaataataacaaaaactTTGCACAATCTGACAATGCTGATGTAAACttgaaacaaaataatataaagtgtgGATATGTTGTTACAGGCCACTAATATGCCAAAAGAGGATactggatatacagtatattagtctAGATTGTATGATGTCTTCTTATTTTCAATCTTTGAGATTCAAAGCAACAAAAGCACTAAAGGTTAAGGTTAATGCTGTTTTAGCCCAGTTTAAAAGATTAGAGAACTTTTACGTTGAAGATAAGTGAGCATTTAACAATCACACTGCGTCGTCTTATCACCACGGTGAAGATGTGTATTGAAGTTAATCACAGCTTTagtatttaagaaagaaaagtgtacATCGACCCCGTGGTTTTCGTGCCGTTCTTCACTTTCAGTACTCAGCATTAAACGGATAATATCTGTGCTTCACactcctgggaaaaaaaaagggaaagttaTCCATCCGTAATTCTCATGTCATATGTACAGAGATCACATGGATATTGTTTATAATATAAAGCACTCACCACTGCATGGGACAAACCCTGTAGTTTCTGTTGTAGCTTAAAATGGTCTTCATTTCATCGTCACTCAGTTCAAAGTCAAACACCTGGCAtcgtaaataaaatgaatttcaaaCACGATAAGTCGGAACGTTTTCCAGCATCAAGGAGTTTCAGGCTTTTCCATCAAAGCTTACCTGGAAGTTCTCCTTGATGCGGGACGGAGTAACAGACTTCGGGATCACAATGACTTTCCTCTGGACGTTGAAGCGGAGCAGGACCTGGAGATACAGAACAGCTGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328119 lncRNA downstream 17951 4798659 ~ 4799157 (-) True G276749
TU327871 lncRNA downstream 259851 4414459 ~ 4557257 (-) True G276557
TU328123 lncRNA upstream 18311 4880418 ~ 4881008 (-) True G276753
XR_003403297.2 lncRNA upstream 81442 4943549 ~ 4945278 (-) True LOC113531850
TU328390 lncRNA upstream 244773 5106880 ~ 5110968 (-) True G276980
TU328395 lncRNA upstream 262366 5124473 ~ 5125478 (-) True G276985
XR_004579974.1 lncRNA upstream 453800 5315907 ~ 5326714 (-) True LOC117599571
XM_026912198.2 mRNA downstream 24311 4784128 ~ 4792797 (-) True psmc2
XM_026909919.2 mRNA downstream 473563 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA downstream 473563 4331260 ~ 4343545 (-) True LOC113523868
XM_026909970.2 mRNA downstream 756594 4044706 ~ 4060514 (-) True cd36
XM_034313185.1 mRNA downstream 871807 3919302 ~ 3945301 (-) True kdm7aa
XM_026922701.2 mRNA upstream 35163 4897270 ~ 4917780 (-) True gys2
XM_026922781.2 mRNA upstream 63609 4925716 ~ 4938813 (-) True ldhba
XM_034313267.1 mRNA upstream 92184 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA upstream 92184 4954291 ~ 4965093 (-) True slc25a3a
XM_026923411.2 mRNA upstream 104125 4966232 ~ 4984301 (-) True tmpoa
TU327987 other downstream 78109 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 230116 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 240070 4576470 ~ 4577038 (-) True LOC117599581
LOC117599444 other downstream 262013 4554619 ~ 4555095 (-) True LOC117599444
LOC117599576 other downstream 271954 4544541 ~ 4545154 (-) True LOC117599576
XR_004579951.1 other upstream 106146 4968253 ~ 4984315 (-) False tmpoa
TU328176 other upstream 108207 4970314 ~ 4972245 (-) False tmpoa
TU329048 other upstream 1119031 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 1120185 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 1170922 6033029 ~ 6033193 (-) True LOC113532437

Expression Profile