RNA id: XM_026923411.2


Basic Information

Item Value
RNA id XM_026923411.2
length 2949
RNA type mRNA
GC content 0.49
exon number 6
gene id tmpoa
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4966232 ~ 4984315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGACCCTGGCCCTGGAGACGAGGAACATGGGACTGGGCTGTAACGGCTAATGGTGGTGCAGGCAGGCGCGCGCgctgttagagagagagagagagcagaagaagaagaagcagaagcagcagcagcagcagcagaagaagaagaaagcagcCATGGCGGAATTTCTCAGCGACCCGTCTGTGTTGACTAAAGACAAGCTGAAAAGCGCGCTGGTGGCCAACAACGTGGCGCTACCGAACGGAGAGCAGCGGAAAGGAGTGTATGTGGAGCTGTATCTGAAGAACCTGACCTCCCAGAACAAGAGGAGCGGCTCCGCGGCGGAGGCTTTCTCCAGCGACGAGGAGCCTCCAGCCCCCGCCGCCGCCTCCATTACAGCTCGCTCCGGCAGGAAAGCCACAAGGAAAACAGACCGAGTTCGTCCTGAGGAGATCGACGTGACCGAACTGACCAACGAGGAGCTGAAGGACCAGCTGCTGAAGTACGGAGTCAACGCCGGACCCATCGTAGCATCCACCCGTAAAGTGTACGAGAAGAAGCTGCAGAAGTTACTGGACCAGGGTCCTCCTCAGACCAGCGTCATCGCCGTCTCCGAGCCGGTTCCGACCCACAACAGCCGTAACGGGAATGCAGACTCGGATCAGTACAGCGATAAAGAGGAAGaaacaacagcagcagcaccagTTCCAGAGCCAGAACCCGAGCCGGAACCGGAACCGGAGCCTGTCCCCGTGGTGGAGCGGCCGCTGAGGAGCCGAGGAAAAACACCAGTGACCACCCGAACTCGAAGCAGCCAGAACAAGATTGAGAAGTTATCAGCCGTTGAGCAGACCCCAAAAACAGCAGAGAGAGACGTGCTGAAGGAATTGTTCCCTAACGAGGTCCTCAACACTCCCACGGGAATCAGCGCCACTCGTCGGCAGCCGATTAAAGGAGCAGCGGGCCGGCCCTTCAGCAGCCCCTGGCAGGACAGCCTGCGTCCACGTCTCACCGAACACAGATACACCAGTTCATCCTACACGGAGACCCGATCTGTCCCTCGCGTCAGCGCCGTCCCTCGCGTCAGCGCCGTCCCTCGCGTCAGCGCCGTCCCCCTGTCCGTCCCCAAACCCGCAGCGCCCCCGAGTGTCCCGGCCAAAGCGCGGCGCCGCGTGCCCGTGTGGGTGCAGCTGCTGCTCCTCAGTGCCGTCGCCGGCTTCCTGCTGTTCGTCTACCAGGCCATGGAGAGCAACCAGATGAGTCCGTTTGGGCAGCCGGGCCGCACCGGTGCGCTAGATAACGCCTGAGAATGAACAGTCTGTCTTTAACGTACCTTCAGACCACCGGCGTTTAAAGACTTCTCTCTTCCCTGTACATCGTTTTTCTAACTCGCCCAGTCCAGAGAACCATCCGGAACCAAACGAGATCGCCAGAACCCGTTTGCGATTCTTTTCTGATCAGTTTTCGAGGGCTCTGTTTGGTGCTAGGTTTGTAAGAAGCTTCTGAATGAAAGCTAGAATTAAGGACAAGCCAAAGGAGTAATGTctctatgtatttttatgttttgtgaataTAATATCTAGGGGGAAAAACCTAATTAATCTGATTTATGAGTTTAATAATAAGTCACAAGACGGCCTTAAACTGAACTCGGGATGCATCGATGCACTTTGTTTAAAATCAACTCGCTAACGTTATAAAGAACGAGCCTAGtagtgcatgaacacacacacacacacacacgtgtacacacgTTTCATGACCACTATTTAAACCAGGGAAAGGTAATCAGAGCCAAATCAAATGTTCCATGGCGCTCCTGACTGGTTCATTAATACTaactaggttaaaaaaaaaaaaaaagtttcctcgTTCTGAAAAATTTAGCACCGATGCGTCCCTAAACCGAACCCGAACCCGAACCCATCTCCTCACTAACTCATCGTTTCACAGTGTTATCGTGTCGAGtcttataatatttatgtatgtaaacTGTGTTTGCAATGTATTAAGACATaaactcactggccactttattaggaacacctgcacgtTCATGTACTCGGCCAATCACGACGCAGAAGCGCAAtgcgtaaaatcatgcagatgcacgtcagcctcagattcctgttcttggctgacggAAGTGGAACCCGGTGTGGTCtttctgctcttgtagctcatccaccttaAAGTTTTGTCGTGtcaagatgcttttctgctcaccacgggtgtaaagagtggttattcgagttaccgtagccttcctgtcagctcgaaccagtctgaccgttctcctctgaccgcTCTCATCTCATGGTCTTTGTTTCTCGCACCATTctgcgtaaactctagagacgtctttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaaatcccaggagattttcTGAATCTTTattaggtgttcctaataaagtggacaatgaGTGTATATTGCAACTCACTTTTGATTATATGCAACATATTTGTACGTGTTTATTCATTagaaattccaaaaaaaaatgtcaacagcacaaaaaaaattcctaattgtttttaatatctTATTATCACTGAAAGGAAATTGACCTCACTGATGATTTATAAACAGTGTATCGACTTGAAAAGATttggtaaataataataatagaagaataataaaaaaactttattaaaatcagAATGTATTGGCTTGAAACCCACCAGACATGACGGAAGCTCAGCGCTTCGTCTAGCCATCGTATTTTCCTCACGTATCGAATATTTACTCCTCCTTATCgtatttattgttgtttatgtttatttgggAGAACGGAGCGTGGATTACGTCTGAGATGGAGAACAGGGCTTCTTTTGAATTAAACCGTGGGgatttttttatactgtagACGGCATCATGTGATTtgtagaaatgaaataaaacagttaacTTCA

Function

GO:

id name namespace
GO:0007084 mitotic nuclear envelope reassembly biological_process
GO:0000793 condensed chromosome cellular_component
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K24031 TMPO; lamina-associated polypeptide 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403297.2 lncRNA downstream 20954 4943549 ~ 4945278 (-) True LOC113531850
TU328123 lncRNA downstream 85224 4880418 ~ 4881008 (-) True G276753
TU328138 lncRNA downstream 89440 4817108 ~ 4876792 (-) False G276761
TU328142 lncRNA downstream 104125 4817108 ~ 4862107 (-) True G276761
TU328136 lncRNA downstream 124478 4817108 ~ 4841754 (-) False G276761
TU328390 lncRNA upstream 122579 5106880 ~ 5110968 (-) True G276980
TU328395 lncRNA upstream 140172 5124473 ~ 5125478 (-) True G276985
XR_004579974.1 lncRNA upstream 331606 5315907 ~ 5326714 (-) True LOC117599571
TU328476 lncRNA upstream 371599 5355900 ~ 5358204 (-) True G277065
TU328477 lncRNA upstream 374150 5358451 ~ 5359228 (-) True G277066
XM_034313267.1 mRNA downstream 1139 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA downstream 1139 4954291 ~ 4965093 (-) True slc25a3a
XM_026922781.2 mRNA downstream 27419 4925716 ~ 4938813 (-) True ldhba
XM_026922701.2 mRNA downstream 48452 4897270 ~ 4917780 (-) True gys2
XM_026912198.2 mRNA downstream 173435 4784128 ~ 4792797 (-) True psmc2
XM_026923007.2 mRNA upstream 4180 4988481 ~ 5003791 (-) True strap
XM_026923349.2 mRNA upstream 96511 5080812 ~ 5315907 (-) False sox5
XM_026923347.2 mRNA upstream 96511 5080812 ~ 5315907 (-) False sox5
XM_026923346.2 mRNA upstream 96511 5080812 ~ 5188515 (-) False sox5
XM_026923350.2 mRNA upstream 96511 5080812 ~ 5188515 (-) False sox5
TU327987 other downstream 227233 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 379240 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 389194 4576470 ~ 4577038 (-) True LOC117599581
LOC117599444 other downstream 411137 4554619 ~ 4555095 (-) True LOC117599444
LOC117599576 other downstream 421078 4544541 ~ 4545154 (-) True LOC117599576
TU329048 other upstream 996837 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 997991 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 1048728 6033029 ~ 6033193 (-) True LOC113532437
trnam-cau_46 other upstream 1118775 6103076 ~ 6103147 (-) True trnam-cau_46
trnal-aag_11 other upstream 2609426 7593727 ~ 7593808 (-) True trnal-aag_11

Expression Profile