Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU328390 |
| length | 239 |
| lncRNA type | intronic |
| GC content | 0.34 |
| exon number | 2 |
| gene id | G276980 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 5106880 ~ 5110968 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003403297.2 | lncRNA | downstream | 161602 | 4943549 ~ 4945278 (-) | True | LOC113531850 |
| TU328123 | lncRNA | downstream | 225872 | 4880418 ~ 4881008 (-) | True | G276753 |
| TU328138 | lncRNA | downstream | 230088 | 4817108 ~ 4876792 (-) | False | G276761 |
| TU328142 | lncRNA | downstream | 244773 | 4817108 ~ 4862107 (-) | True | G276761 |
| TU328127 | lncRNA | downstream | 262509 | 4801907 ~ 4844371 (-) | True | G276755 |
| TU328395 | lncRNA | upstream | 13505 | 5124473 ~ 5125478 (-) | True | G276985 |
| XR_004579974.1 | lncRNA | upstream | 204939 | 5315907 ~ 5326714 (-) | True | LOC117599571 |
| TU328476 | lncRNA | upstream | 244932 | 5355900 ~ 5358204 (-) | True | G277065 |
| TU328477 | lncRNA | upstream | 247483 | 5358451 ~ 5359228 (-) | True | G277066 |
| TU328891 | lncRNA | upstream | 336183 | 5447151 ~ 5448687 (-) | True | G277443 |
| XM_026923007.2 | mRNA | downstream | 103089 | 4988481 ~ 5003791 (-) | True | strap |
| XM_026923411.2 | mRNA | downstream | 122579 | 4966232 ~ 4984301 (-) | True | tmpoa |
| XM_034313267.1 | mRNA | downstream | 141787 | 4954291 ~ 4965093 (-) | False | slc25a3a |
| XM_034313265.1 | mRNA | downstream | 141787 | 4954291 ~ 4965093 (-) | True | slc25a3a |
| XM_026922781.2 | mRNA | downstream | 168067 | 4925716 ~ 4938813 (-) | True | ldhba |
| XM_026923526.2 | mRNA | upstream | 228805 | 5339773 ~ 5361979 (-) | True | bcat1 |
| XM_034312990.1 | mRNA | upstream | 294506 | 5405474 ~ 5419057 (-) | True | casc1 |
| XM_034313035.1 | mRNA | upstream | 353345 | 5464313 ~ 5487007 (-) | False | parpbp |
| XM_034313034.1 | mRNA | upstream | 353345 | 5464313 ~ 5487003 (-) | False | parpbp |
| XM_026922759.2 | mRNA | upstream | 353345 | 5464313 ~ 5486990 (-) | True | parpbp |
| XR_004579951.1 | other | downstream | 122565 | 4968253 ~ 4984315 (-) | False | tmpoa |
| TU328176 | other | downstream | 134635 | 4970314 ~ 4972245 (-) | False | tmpoa |
| TU327987 | other | downstream | 367881 | 4734931 ~ 4738999 (-) | True | G276650 |
| LOC117599580 | other | downstream | 519888 | 4586256 ~ 4586992 (-) | True | LOC117599580 |
| LOC117599581 | other | downstream | 529842 | 4576470 ~ 4577038 (-) | True | LOC117599581 |
| TU329048 | other | upstream | 870170 | 5981138 ~ 5991934 (-) | False | copg2 |
| TU329042 | other | upstream | 871324 | 5982292 ~ 5984564 (-) | True | G277575 |
| XR_003403345.2 | other | upstream | 922061 | 6033029 ~ 6033193 (-) | True | LOC113532437 |
| trnam-cau_46 | other | upstream | 992108 | 6103076 ~ 6103147 (-) | True | trnam-cau_46 |
| trnal-aag_11 | other | upstream | 2482759 | 7593727 ~ 7593808 (-) | True | trnal-aag_11 |
