RNA id: TU328476


Basic Information

Item Value
RNA id TU328476
length 1484
lncRNA type intronic
GC content 0.32
exon number 2
gene id G277065
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5355900 ~ 5358204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATGGCTTTACTGTAGTCATTCATGCTAACTATAATACTACCATGGCTTTACTATAGTCATTCATGCTAACTATAATACTACCATGGCTTTACTATAGTCATTCATGCTAACTATAATACTACCATGGCTTTACTATAGTCATTCATGCTAACTATAATACTACCATGGCTTTAGTATAGTCATTCATGCTAACTATAATACTGCCATGGCTTTACTATAGTCATTCATGCTAACTATAATACTGCCATGGCTTTACTATAGTCATTCATGCTAACCTTTAGTACTACCATGGTTATATTATGGTACTTCATAGTCACAATAATACTACCATGGTTTTACTATAGTATGGCATACTTACTATAAAACTGCCACTGCTTTATTATAACACTCCGTGGTAACTGTAATGCTACTATGTTTCTGCTCTACTCTGATGCTTCATGCTCACTATAGTACTGTTATGGTTTTAATATGGTACGTAGCATTAACTATATGGTATTTCACGTTAATAAGGTAAACATGGTTTTGCTGTAGTACTCCAGGTTTACTATAATACATCCATGGCTTTACTGTTATACATAATACGCACTATAATACTGCCACAGTTTTACTATACTACTTCATGTGCACTATAATATACAGCCATGGCTTTACTCTAACACAATGTGGGAACTGTAATACAACTATGAGTCTCCTATGATACTTCATGGTCACTATAATACTGCTACAGCTTTACTATGATACTTCACACTCGCTATAATACTGCTACAGCTTTACTATAATGCTTTGTAGTACCTATAGCATTACCCTGGTTGGTTTTACTATAGTATGTGATGATCATTATAATACTAAACATGGGTTTACTATTGTACTTTATGCTAACTGTAATACTACGAAGGCTTTACTGTGTTGCTTAACATTTACTATAAGGGTACAATGGctttattttgacatttcatGCTAAAAGTAATACTAACATGATTTTACTTTAGTACTTCATGGTACCTGTACTACTACCAGAGTTTTGCTGTGGTACTTGTAATATGTCAGTATAATACTACTGTTGTTTcatatgttatgttttattagtTCTAGTATCCTGGTTTAACTATAATACATCATGGTAACTGTAATACTACTATGGTGGTACGTCAGACTAATACTGCTATCATTTATATGATATATGCATATGATATATGCTATATCATTTACTATGATCCCTATATACTTCATAGTATCTAAGATACTACCATGGTTTTACTACAGTACCTCATGCTATCTCTAATATCATGGTTTTATTGTCGTTCTTCATGCTAGCTATTCTTCATGGGAACTAGATTTACAATGGTAGTACTGTAATACTACTTTGTTTTACTGTATTACTTTATAGTAACTCTAATACTACCATAGTTAAACTATAACACTTCATGGTTATTGTAATACTACCATAGTTTTACAATCATACATCACAGTACCTATAATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579974.1 lncRNA downstream 29186 5315907 ~ 5326714 (-) True LOC117599571
TU328395 lncRNA downstream 230422 5124473 ~ 5125478 (-) True G276985
TU328390 lncRNA downstream 244932 5106880 ~ 5110968 (-) True G276980
XR_003403297.2 lncRNA downstream 410622 4943549 ~ 4945278 (-) True LOC113531850
TU328123 lncRNA downstream 474892 4880418 ~ 4881008 (-) True G276753
TU328477 lncRNA upstream 247 5358451 ~ 5359228 (-) True G277066
TU328891 lncRNA upstream 88947 5447151 ~ 5448687 (-) True G277443
TU328897 lncRNA upstream 201730 5559934 ~ 5560268 (-) False G277447
TU328898 lncRNA upstream 201730 5559934 ~ 5560322 (-) True G277447
TU328954 lncRNA upstream 300280 5658484 ~ 5727420 (-) False G277494
XM_026923349.2 mRNA downstream 39993 5080812 ~ 5315907 (-) False sox5
XM_026923347.2 mRNA downstream 39993 5080812 ~ 5315907 (-) False sox5
XM_026923346.2 mRNA downstream 167385 5080812 ~ 5188515 (-) False sox5
XM_026923350.2 mRNA downstream 167385 5080812 ~ 5188515 (-) False sox5
XM_026923345.2 mRNA downstream 167385 5080812 ~ 5188515 (-) True sox5
XM_034312990.1 mRNA upstream 47270 5405474 ~ 5419057 (-) True casc1
XM_034313035.1 mRNA upstream 106109 5464313 ~ 5487007 (-) False parpbp
XM_034313034.1 mRNA upstream 106109 5464313 ~ 5487003 (-) False parpbp
XM_026922759.2 mRNA upstream 106109 5464313 ~ 5486990 (-) True parpbp
XM_034313041.1 mRNA upstream 155878 5514082 ~ 5528820 (-) True th2
XR_004579951.1 other downstream 371585 4968253 ~ 4984315 (-) False tmpoa
TU328176 other downstream 383655 4970314 ~ 4972245 (-) False tmpoa
TU327987 other downstream 616901 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 768908 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 778862 4576470 ~ 4577038 (-) True LOC117599581
TU329048 other upstream 622934 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 624088 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 674825 6033029 ~ 6033193 (-) True LOC113532437
trnam-cau_46 other upstream 744872 6103076 ~ 6103147 (-) True trnam-cau_46
trnal-aag_11 other upstream 2235523 7593727 ~ 7593808 (-) True trnal-aag_11

Expression Profile