RNA id: TU328898



Basic Information


Item Value
RNA id TU328898
length 389
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G277447
representative True

Chromosome Information


Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5559934 ~ 5560322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TATTTTTAGAAACTTTTTATTATGAGActaaagtgtaaaaaatatgGATGTAAggcattttccccattttttgttttctccttgGAATATTGTAAAGGCAGAGTTAAACAGGCAGTGTGGAGAGAAAATAGACCGCCATGGTTTGGACAATAGCTGCATAACCTTTGATCACTGTGAACTCCGAGTCATATTACATGTACTTCCCGTTAAATAAGACACGTTGGTGCTGAAATCAAACTCTGGAGTGTCAAACTCCAGGAAAAAtcagacaaacaaaacaaaacaaaaaaagcctaATACCGTAAACAGATGCATTTAGACTACACGTCTGAAAAGGCAAGAGGTAATAAGCAACATACGGTGTTTAGGCTGTGTTTATGTATAAgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU328891 lncRNA downstream 111247 5447151 ~ 5448687 (-) True G277443
TU328477 lncRNA downstream 200706 5358451 ~ 5359228 (-) True G277066
TU328476 lncRNA downstream 201730 5355900 ~ 5358204 (-) True G277065
XR_004579974.1 lncRNA downstream 233220 5315907 ~ 5326714 (-) True LOC117599571
TU328395 lncRNA downstream 434456 5124473 ~ 5125478 (-) True G276985
TU328954 lncRNA upstream 98162 5658484 ~ 5727420 (-) False G277494
TU328966 lncRNA upstream 101489 5661811 ~ 5663019 (-) True G277506
TU328968 lncRNA upstream 109246 5669568 ~ 5670534 (-) True G277508
TU328952 lncRNA upstream 154188 5714510 ~ 5727420 (-) True G277494
TU328979 lncRNA upstream 170523 5730845 ~ 5731069 (-) True G277519
XM_026923147.2 mRNA downstream 8981 5529156 ~ 5550953 (-) True pah
XM_034313041.1 mRNA downstream 31114 5514082 ~ 5528820 (-) True th2
XM_034313035.1 mRNA downstream 72927 5464313 ~ 5487007 (-) False parpbp
XM_026923579.2 mRNA upstream 5355 5565677 ~ 5625699 (-) True LOC113532275
XM_026922794.2 mRNA upstream 224588 5784910 ~ 5790989 (-) True si:dkeyp-38g8.5
XM_026922873.2 mRNA upstream 428870 5989192 ~ 6005129 (-) True copg2
XM_026923550.2 mRNA upstream 449968 6010290 ~ 6011543 (-) False ucn3l
XM_026923551.2 mRNA upstream 449968 6010290 ~ 6011543 (-) True ucn3l
XR_004579951.1 other downstream 575619 4968253 ~ 4984315 (-) False tmpoa
TU328176 other downstream 587689 4970314 ~ 4972245 (-) False tmpoa
TU327987 other downstream 820935 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 972942 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 982896 4576470 ~ 4577038 (-) True LOC117599581
TU329048 other upstream 420816 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 421970 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 472707 6033029 ~ 6033193 (-) True LOC113532437
trnam-cau_46 other upstream 542754 6103076 ~ 6103147 (-) True trnam-cau_46
trnal-aag_11 other upstream 2033405 7593727 ~ 7593808 (-) True trnal-aag_11

Expression Profile