RNA id: TU328954


Basic Information

Item Value
RNA id TU328954
length 2484
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G277494
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5658484 ~ 5727420 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGGAAAGAAGTCACCTTTATTGCTGATATATTAAAGTCCGGACGACTACCGTGCTTGTTTTCTTTAAGCATggaaagggattttttttatacagcatttatttacagCTTCTATACATGTGACAGTCACTAACACAGGACAGAGGGGGACATGTTCAGCCACGTCTATCTGCTCCTTTCACTCCTCttcagacaaaaatgcacacatttaaacatgGCACGCCACCCTTGGTGAAGAAGAACAAGTAGAAGAATAGTGAAAAAGCACAGATCTTTGGAAATTGCTTCCATTAAAAAGACAATATAGTTTATTCTACCTCTTgaagagcttttttttctaCCATATGTGGCATGGCAGCTGGGTTTAAAACGATCAGACAAACGAACgaacaaacaaaatgcacatCTGAAGCAAGAGGAGGAAAATACTGCAGTGTGACAATTCTCCTAATTGAAATGAatactacagaaaaaaagagaaaaatggaaaatttgAGCATGATGGCTGTATTTCTAACAGTACACGCTGAACACTACTGCTATACAGGTAATAATAGTTGAGTGCACCTAGTATATCAGCTCTTTTACCTGGTACTGTGGAGCAAATTAACCTTTCGCTGCCCGCTCAGCAGGCCCGCCTTGTCAATTTAGAAAAGTCCCAAAGATCCAGAGAGGGGCCAGGAGTGGATCTTCtttatatgaacaaaaaaaaaatctgaatagaACCACATTCTTTTGAACCAAAGGACTACATATATGTGCACTTGATTATCCTAAGTGGTCATGGCTTTTTCTTTAATACCTCtgtgattaattaattatgctcTCCAACTTAACACAAGGTTCTAGTAGTGCTATAGGGATgtatatgagaaaaaaaaaatgaggaacaAAAGCCTGATACGTGTTTAGCTATTTCTTTTTGTAACATGTAATGTGCAAGATACTTGatgttactgtttattactCGATTATGTGAGATTAGTGCCCAGTATTGACTGTTGTGTGCCATTTTCAGTATACTCAGAACACATTTTGAATCTGAGTTATGACATTCGAATTCGAGTTACACACTTGAGGTGCTTTGGAAAGGGGGAGGGGGCGGGACAAGGACAGTGATCAGGCACTCTGACTGGACGCCCTATTTCTTCCTGTAGTTGCCCAGCTGAACAGCGGAGCGGTCAAAGACACAACGGAAGGTGATGGGTTGGACCTCCCAGTACGGCACGGGGTTGCTGAACAGACTGATGCCGGAATACATGGCCTTCTTGGTGTTGAAGCTGGGAGGGCAGAAGTCTTCTGTTCCCACAGAGGCTATCTTGTTGGCATGAAGATAGatcaccCTGAATGTACTTGTGGTCAGAAAGACCAGCAGGCACACTGGTTAGAGCGTTGTGGTCCAGGTGGAGCTCCCTCAAGTGTGGCATCATGGACAGAGTTCTGTTCTCCACAACACTGATCTCATTACTGCTCAGGCcaagcctTGGCCAGGTGCTTGAGACCTTTCAGGCTGTCGGCAGAGACCTTGGTAATCCTGTTCCCATCCAGGTGGAGCTCTGACAGAGAGCTAGGCAGACCTGCAAGGATTCGTAAGCAGGATAAAGAAATGAACAGTGATGGTAAGTACAGTTTAGTCATCTTTTCAAATTACAGGACAAGGAATAATATGAATAGGAATTGTAGGAATGGGTATGGAGTCAAGTATGAACAATGATCTCCTGAGTGACCCTTTCGTCTGGAATGTCCTGTTTAGCTGAAATGTTCTACCTAAAATATCTACATGGAATTACTGTTGCTGTCATTAATTTTATACGATTACGCATTAGGGATTGTAGGTTTTGTTTATCAGTGTGAAGTCAAactataaatagacaaataaaagtttaaaaattgtgtgtgtgtgatgcataAATTGTCCTACtcagaccaaaaaaacaaaaaaaatcagaccaTTTGTCTCACCACTGCCATGGCGACAGACATCACACGACTGGTTGCATTCATCATCATCCCAAACTTCATCAAAATGAACCGCCATCATGGCACGCCGACACCTGAGCGCAAACATCGCACGTGAATGAGTCATTGCAACAACCGAATTTCCGTCATACCGTCATTTCCATTTCACACTGGACTTTAATACAACTGCAGTAACAAAAGCACGTGCTCATGTGTAAGCTGGTCCATATGAGCTAACGGCAGTGGCGTTTTCTCACCTGTCCACGTTCTGACAATAAGCCACCATATTGTGAAGCTTCTGCTGGCCGGTGTTCTCCATCACAACCATGGTGCTGATCCTGAAAATATCCGCAAACCCATAGAACACAACGCAGTCTGCTGGACCGTCATCTCTccctgaaaacaaaataaagctcAGTTTgagtcacatcacatcacacactgttctcaCATTTCAACGCAAATGAGGTAGCGATATCTGCCATGTCTTATTAAGGGCTGATTCCACTATTACTGGTTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328898 lncRNA downstream 98162 5559934 ~ 5560322 (-) True G277447
TU328897 lncRNA downstream 98216 5559934 ~ 5560268 (-) False G277447
TU328891 lncRNA downstream 209797 5447151 ~ 5448687 (-) True G277443
TU328477 lncRNA downstream 299256 5358451 ~ 5359228 (-) True G277066
TU328476 lncRNA downstream 300280 5355900 ~ 5358204 (-) True G277065
TU328979 lncRNA upstream 3425 5730845 ~ 5731069 (-) True G277519
TU328962 lncRNA upstream 34240 5761660 ~ 5766267 (-) True G277502
TU328960 lncRNA upstream 50582 5778002 ~ 5781171 (-) True G277500
TU329033 lncRNA upstream 233254 5960674 ~ 5997392 (-) True G277567
TU329051 lncRNA upstream 251530 5978950 ~ 5988344 (-) True G277577
XM_026923579.2 mRNA downstream 32785 5565677 ~ 5625699 (-) True LOC113532275
XM_026923147.2 mRNA downstream 107531 5529156 ~ 5550953 (-) True pah
XM_034313041.1 mRNA downstream 129664 5514082 ~ 5528820 (-) True th2
XM_034313035.1 mRNA downstream 171477 5464313 ~ 5487007 (-) False parpbp
XM_026922794.2 mRNA upstream 57490 5784910 ~ 5790989 (-) True si:dkeyp-38g8.5
XM_026922873.2 mRNA upstream 261772 5989192 ~ 6005129 (-) True copg2
XM_026923550.2 mRNA upstream 282870 6010290 ~ 6011543 (-) False ucn3l
XM_026923551.2 mRNA upstream 282870 6010290 ~ 6011543 (-) True ucn3l
XM_026922928.2 mRNA upstream 285604 6013024 ~ 6112709 (-) False col7a1l
XR_004579951.1 other downstream 674169 4968253 ~ 4984315 (-) False tmpoa
TU328176 other downstream 686239 4970314 ~ 4972245 (-) False tmpoa
TU327987 other downstream 919485 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 1071492 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 1081446 4576470 ~ 4577038 (-) True LOC117599581
TU329048 other upstream 253718 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 254872 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 305609 6033029 ~ 6033193 (-) True LOC113532437
trnam-cau_46 other upstream 375656 6103076 ~ 6103147 (-) True trnam-cau_46
trnal-aag_11 other upstream 1866307 7593727 ~ 7593808 (-) True trnal-aag_11

Expression Profile