RNA id: TU329033


Basic Information

Item Value
RNA id TU329033
length 894
lncRNA type sense_over
GC content 0.34
exon number 2
gene id G277567
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5960674 ~ 5997392 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAATAGTCTCTATAACAGTCTCTTTTGACATTCAGTTGACATGGGAGTGGTGAAGGAATTTTTATTGTCCAGCAGATGTCAATATAGAGCTCGATGTTAAGTACGTTGATGCTCTGATTCATTTTAACCTCAAATAAGTTCTGTCTAAAAAGCTTCGCTCTGCCCTTCACTACTGAGCGAGCGGTAGTTAATCTGTTTCGTCAAGAGGATCAGTTGACTGATATTactaaatctgattggtcaagggAGTCGTCTGTGTAAATACATTGACTAGTTCATACCAGATTCaagagattttttcttttttccaaatgattttatattaacaATATCTTCACCATATTTTATTTCCTAACGTAATAGTCACAGGGAAAGTAAATAATATTGTATGATATTTAAAATGAGATATCGCCGCTTCCACTTCGGATGCAGACGTTTATTGCTATCTGCCACCGTCTCAGTTATTCACGTGAATATGGCGTGAGTTTACTTGGATTCGTGGGTAAACTTGGCTTACTggtaaatcaaaaaaaaaaaaaaaaaaaaaacataaataattcaaaatatgaACAGCCAAATGAAGCAGAAATTAACCTGGGTGATCTAGGgccaaagaaagaaatgtacacCACCattcagggaagaaaaaaaaaaaaataaagtcaattCTTACAGCTAATCATCTGCAAGCCACGGAGAAACCAATCGTCTTCtcaatattagaatattaataattaaataataataataataataataataatataacaataataaaaaatacaggtCACTTTCAATCTGAATTAACAATCCCTCCGTTTTCACAAAGGGGACAGAAAGATTTTATAAGCAGAGGTGGAAATAGAGTCCTTCCCTCTCCGAGAGGATGTTga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328960 lncRNA downstream 179503 5778002 ~ 5781171 (-) True G277500
TU328962 lncRNA downstream 194407 5761660 ~ 5766267 (-) True G277502
TU328979 lncRNA downstream 229605 5730845 ~ 5731069 (-) True G277519
TU328952 lncRNA downstream 233254 5714510 ~ 5727420 (-) True G277494
TU328968 lncRNA downstream 290140 5669568 ~ 5670534 (-) True G277508
TU329374 lncRNA upstream 786267 6783659 ~ 6787471 (-) True G277878
TU329377 lncRNA upstream 793870 6791262 ~ 6791475 (-) True G277881
TU329813 lncRNA upstream 880360 6877752 ~ 6878941 (-) True G278225
TU329864 lncRNA upstream 1074354 7071746 ~ 7074585 (-) True G278265
TU329874 lncRNA upstream 1231613 7229005 ~ 7229440 (-) True G278275
XM_026922794.2 mRNA downstream 169685 5784910 ~ 5790989 (-) True si:dkeyp-38g8.5
XM_026923579.2 mRNA downstream 334975 5565677 ~ 5625699 (-) True LOC113532275
XM_026923147.2 mRNA downstream 409721 5529156 ~ 5550953 (-) True pah
XM_034313041.1 mRNA downstream 431854 5514082 ~ 5528820 (-) True th2
XM_034313034.1 mRNA downstream 473671 5464313 ~ 5487003 (-) False parpbp
XM_026923550.2 mRNA upstream 12898 6010290 ~ 6011543 (-) False ucn3l
XM_026923551.2 mRNA upstream 12898 6010290 ~ 6011543 (-) True ucn3l
XM_026922928.2 mRNA upstream 15632 6013024 ~ 6112709 (-) False col7a1l
XM_026922930.2 mRNA upstream 15632 6013024 ~ 6112664 (-) False col7a1l
XM_034313198.1 mRNA upstream 15632 6013024 ~ 6112664 (-) False col7a1l
XR_004579951.1 other downstream 976359 4968253 ~ 4984315 (-) False tmpoa
TU328176 other downstream 988429 4970314 ~ 4972245 (-) False tmpoa
TU327987 other downstream 1221675 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 1373682 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 1383636 4576470 ~ 4577038 (-) True LOC117599581
XR_003403345.2 other upstream 35637 6033029 ~ 6033193 (-) True LOC113532437
trnam-cau_46 other upstream 105684 6103076 ~ 6103147 (-) True trnam-cau_46
trnal-aag_11 other upstream 1596335 7593727 ~ 7593808 (-) True trnal-aag_11
TU330291 other upstream 2055696 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 2221169 8218561 ~ 8219680 (-) True G278912

Expression Profile