RNA id: TU329881


Basic Information

Item Value
RNA id TU329881
length 1074
lncRNA type sense_over
GC content 0.38
exon number 1
gene id camk1da
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7421988 ~ 7500079 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcaagcttgaaatgagtaaaaatatctagaaataggtttaactCTCTTACATTAACAAtctaataaagataaatattagttgaatttacattatattactcACTAAAAtatcagaggtttttttttttgtttttttgcggTGAAGAAAATCGTTAGATGGGGACAGCCCTAATATAGCTACATATCATGTAAATATGTCACAAATCTACCGAGTGCGTAGTTAAATCAGACGTGTATGtagtaaaaacaaaactaagACGGGGTGGAATTTAACTAAAAGTTAAGGGCTTTAAAAATCACTTATTCCGGTTATTCCGAGACCAGTGAGTCTCCTTGACCGTAAACGCTTCTGAGTGTCTCGCTTTGTCTCCTGCAGCCTttacaatgtgttgttcttgcaggagaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagaaggGTGAAGGGTGTGTCACATTCTCCTAAGTGCCATCAGAAACGTCATGCAACTTCCctccatcttgttttttttcctcctgaatGTTTACGTGTACATGATGTAGTCACAGGATTTCTGTTCAggatttatcatttatcagtgtacgccattttgtcatttcatgTTAAAGGTGTCTGAGATTCTTGGCAGtttctgtacatttctgtgTTATTGAAGATGTTAGATGTTATGGATGCTCAAAGGTACCCATGTACCCGGCAGAGGCCTGAGATTAGAAGCCAGAGAAGACCGTTTTTATCTGTGCAGTCGAGTATTTTTATACTGAGAGGAACTCTTGGAACTCTTTGTGGCTGTGTCTTCGTTTCTGTTATGGTATTTGtgcgagtgtgagtgtgtgtgtttgtctcactgtctgtgttTATATGAGGTAATTGATGTGTATGTCATGCCTGTGGTGTTTTAAAGACAATGTGAaatgttaaacacatttttctccCATAACATAATGTAATCTGATTGGATGGTGAGACAAGACCTGATATCACTGGTTAATTCCAGATTATGAGTtatatattttgtcttttaaggCCAGGAACCAcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579863.1 lncRNA downstream 8771 7414348 ~ 7416071 (-) True LOC117599447
TU329874 lncRNA downstream 195402 7229005 ~ 7229440 (-) True G278275
TU329864 lncRNA downstream 350257 7071746 ~ 7074585 (-) True G278265
TU329813 lncRNA downstream 545901 6877752 ~ 6878941 (-) True G278225
TU329377 lncRNA downstream 633367 6791262 ~ 6791475 (-) True G277881
TU329920 lncRNA upstream 69657 7495572 ~ 7496263 (-) True G278312
XR_004579997.1 lncRNA upstream 104869 7530784 ~ 7534282 (-) False LOC117599592
XR_004579998.1 lncRNA upstream 104869 7530784 ~ 7534281 (-) False LOC117599592
XR_004579996.1 lncRNA upstream 104869 7530784 ~ 7534281 (-) True LOC117599592
TU330151 lncRNA upstream 370920 7796835 ~ 7879017 (-) True G278520
XM_026923502.2 mRNA downstream 21335 7391215 ~ 7403507 (-) True optn
XM_026923503.2 mRNA downstream 21339 7391643 ~ 7403503 (-) False optn
XM_026923455.2 mRNA downstream 134451 7249424 ~ 7290391 (-) False ninj2
XM_026923454.2 mRNA downstream 137882 7249424 ~ 7286960 (-) False ninj2
XM_026923457.2 mRNA downstream 170198 7248866 ~ 7254644 (-) True ninj2
XM_034313286.1 mRNA upstream 84173 7510088 ~ 7527943 (-) False LOC113531701
XM_026922562.2 mRNA upstream 84261 7510176 ~ 7527943 (-) True LOC113531701
XM_034313285.1 mRNA upstream 84261 7510176 ~ 7527925 (-) False LOC113531701
XM_026923324.2 mRNA upstream 114009 7539924 ~ 7560116 (-) True ttll12
XM_034313356.1 mRNA upstream 134234 7560149 ~ 7592040 (-) True pnpla3
trnam-cau_46 other downstream 1321695 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 1391649 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 1432908 5981138 ~ 5991934 (-) False copg2
TU329042 other downstream 1440278 5982292 ~ 5984564 (-) True G277575
TU328176 other downstream 2452597 4970314 ~ 4972245 (-) False tmpoa
trnal-aag_11 other upstream 167812 7593727 ~ 7593808 (-) True trnal-aag_11
TU330291 other upstream 627173 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 792646 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 1383305 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 1781436 9207351 ~ 9208563 (-) True G279415

Expression Profile