Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU330151 |
| length | 805 |
| lncRNA type | read_through |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G278520 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 7796835 ~ 7879017 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579997.1 | lncRNA | downstream | 262553 | 7530784 ~ 7534282 (-) | False | LOC117599592 |
| XR_004579998.1 | lncRNA | downstream | 262554 | 7530784 ~ 7534281 (-) | False | LOC117599592 |
| XR_004579996.1 | lncRNA | downstream | 262554 | 7530784 ~ 7534281 (-) | True | LOC117599592 |
| TU329920 | lncRNA | downstream | 300572 | 7495572 ~ 7496263 (-) | True | G278312 |
| TU329881 | lncRNA | downstream | 370920 | 7424842 ~ 7425915 (-) | False | camk1da |
| TU330235 | lncRNA | upstream | 87802 | 7966819 ~ 7967421 (-) | False | avpr1ab |
| TU330636 | lncRNA | upstream | 337996 | 8217013 ~ 8217293 (-) | True | G278911 |
| TU330657 | lncRNA | upstream | 359957 | 8238974 ~ 8239676 (-) | True | G278920 |
| TU330707 | lncRNA | upstream | 510481 | 8389498 ~ 8390559 (-) | True | G278963 |
| TU330836 | lncRNA | upstream | 733101 | 8612118 ~ 8612342 (-) | True | G279064 |
| XM_026923004.2 | mRNA | downstream | 10356 | 7701032 ~ 7786479 (-) | True | scube1 |
| XM_026923005.2 | mRNA | downstream | 10357 | 7701032 ~ 7786478 (-) | False | scube1 |
| XM_026923401.2 | mRNA | downstream | 106699 | 7643447 ~ 7690136 (-) | True | mpped1 |
| XM_034313356.1 | mRNA | downstream | 204795 | 7560149 ~ 7592040 (-) | True | pnpla3 |
| XM_026923327.2 | mRNA | downstream | 204795 | 7580162 ~ 7592040 (-) | False | pnpla3 |
| XM_034313096.1 | mRNA | upstream | 53956 | 7932973 ~ 7936791 (-) | False | LOC113531950 |
| XM_034313094.1 | mRNA | upstream | 53956 | 7932973 ~ 7936791 (-) | True | LOC113531950 |
| XM_034313095.1 | mRNA | upstream | 53995 | 7933012 ~ 7936791 (-) | False | LOC113531950 |
| XM_034313092.1 | mRNA | upstream | 67393 | 7946410 ~ 7956609 (-) | False | hcfc2 |
| XM_034313093.1 | mRNA | upstream | 67393 | 7946410 ~ 7956190 (-) | False | hcfc2 |
| trnal-aag_11 | other | downstream | 203027 | 7593727 ~ 7593808 (-) | True | trnal-aag_11 |
| trnam-cau_46 | other | downstream | 1693688 | 6103076 ~ 6103147 (-) | True | trnam-cau_46 |
| XR_003403345.2 | other | downstream | 1763642 | 6033029 ~ 6033193 (-) | True | LOC113532437 |
| TU329048 | other | downstream | 1804901 | 5981138 ~ 5991934 (-) | False | copg2 |
| TU329042 | other | downstream | 1812271 | 5982292 ~ 5984564 (-) | True | G277575 |
| TU330291 | other | upstream | 174071 | 8053088 ~ 8068077 (-) | True | G278634 |
| TU330637 | other | upstream | 339544 | 8218561 ~ 8219680 (-) | True | G278912 |
| XR_003403340.2 | other | upstream | 930203 | 8809220 ~ 8809338 (-) | True | LOC113532431 |
| TU331209 | other | upstream | 1328334 | 9207351 ~ 9208563 (-) | True | G279415 |
| trnay-gua_2 | other | upstream | 1743516 | 9622533 ~ 9622619 (-) | True | trnay-gua_2 |
