RNA id: TU330836


Basic Information

Item Value
RNA id TU330836
length 225
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G279064
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8612118 ~ 8612342 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACTTTACAACCCTAAGACTCaactaaaaagaaagaaaaagcacttCAACCCCCCACTGTAGAATGTTATTACAATATTTAGTCTTTTATTCCACAACAGTTAAAGATGTGGTCTTTACATACCTGCAATATTATGAACAGATGCAGAAGGTTGCTCAcaaagtggtagctcagtgctTAAGACTTTGTGCTACTCATTGAAGGGTTAAGCATTCAAATCCCac

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330707 lncRNA downstream 221559 8389498 ~ 8390559 (-) True G278963
TU330657 lncRNA downstream 372442 8238974 ~ 8239676 (-) True G278920
TU330636 lncRNA downstream 394825 8217013 ~ 8217293 (-) True G278911
TU330235 lncRNA downstream 644697 7966819 ~ 7967421 (-) False avpr1ab
TU330151 lncRNA downstream 733101 7796835 ~ 7879017 (-) True G278520
XR_004579873.1 lncRNA upstream 86088 8698430 ~ 8698791 (-) True LOC117599455
TU331172 lncRNA upstream 581274 9193616 ~ 9194003 (-) True G279382
TU331392 lncRNA upstream 723994 9336336 ~ 9337530 (-) True G279588
TU331405 lncRNA upstream 773791 9386133 ~ 9387789 (-) False G279592
TU331406 lncRNA upstream 773791 9386133 ~ 9389747 (-) True G279592
XM_034313061.1 mRNA downstream 63490 8488152 ~ 8548628 (-) False sbf1
XM_034313065.1 mRNA downstream 63490 8488152 ~ 8548628 (-) False sbf1
XM_034313063.1 mRNA downstream 63490 8488152 ~ 8548628 (-) False sbf1
XM_034313062.1 mRNA downstream 63490 8488152 ~ 8548628 (-) False sbf1
XM_034313060.1 mRNA downstream 63490 8488152 ~ 8548628 (-) True sbf1
XM_034313254.1 mRNA upstream 14579 8626921 ~ 8633955 (-) True hsp90b1
XM_026922697.2 mRNA upstream 555247 9167589 ~ 9188935 (-) True tspan12
XM_034313077.1 mRNA upstream 555247 9167589 ~ 9188122 (-) False tspan12
XM_026922951.2 mRNA upstream 676753 9289095 ~ 9291409 (-) True parietopsin
XM_026923675.2 mRNA upstream 726426 9338768 ~ 9347046 (-) True LOC113532331
TU330637 other downstream 392438 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 544041 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 1018310 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 2508971 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 2578925 6033029 ~ 6033193 (-) True LOC113532437
XR_003403340.2 other upstream 196878 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 595009 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1010191 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 1657415 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 2382763 10995105 ~ 11007143 (-) True si:ch211-51e12.7

Expression Profile