RNA id: TU331406


Basic Information

Item Value
RNA id TU331406
length 2227
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G279592
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9386133 ~ 9389747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGTTCTTCCTGTAGGATATGCGATGGTAGCTGCAATACACAGCAAACGCAAGAAGGATGAGTGCCAGCGCACCACACGAAGCCACAATGGCGATCAATGTCGTTTGGATATCTTCAGGCTGCTTTTCTTTAGgctacagagacagaaaaaaatggtgcTTTCAAACAAGAGCTTGTCACCCCATGATATTTTTAGGTGATATTCACAATCGTGTATCTTACCGTGGACTCCATAGAATTATTAGTTTCCTCTGATGGTTCAAGtactaaagtgaaaaaaatgtcattcagtATGTGAAGAAATGTACAAGGTGAATTTGGTATAAATGAGAAACTTGCAAAAAGTCGTCATAGCCTCACAGATCAGTTGTATAGAGTTGTACTTATAAACACCATTTGTCTCATGTCCAGACATGTTGCAGTTACCAGGTGCATTGATTATCTTTATGAGCTTTGCACAGTCTCTCTCCAATTTGTCCTGTGAATGTAATAAGTACATAGTCAGCTCTAGAATTAatggcacccttcaagagaatGGTCTTACCTGGCTGTATGTATATGGACTTTTCAAAATGACCCCATACATAGTTCCCAAATTAACAGAAATAATTCCTTGACACAAAATCAGTCATTTGCAGTGATCTAATTAGAGAACCTGTGGTTGAATCGAGagcccagaaaaaaaaatataaaggagGAGAGGATGAGGTCTTTTACAAGTGCCTACAGACGTTACAGGAAATAGCTCAGTGCTGTTAATCTCACTGGAGGAGTCTTCATCAAATATTAACTGGATGCAGATAAATTGGAAACCATTGTTTTGCAGGAAAAATTGTACTACTTAGGCCAGGGGTGTCCAAGGGCCTGTGTGGGTGCAGATTTTCATTCCAATCCAGCAGCAGTCCAACTTCTGCTTAGTTGagatgaaaacctgcacccacaccagcTCTTTCTGGATAACATTGGACACCCCTGACTTAGGCTATagattttatgcattaaaataaaaccaaacagcaTCAAAACCAAACTCAAAAAAATATTACTCGCTGAATACACtatatatttgcatttgctTTATTTGCTGACTAATTCTGTTGTGGATGTAGCTTGATGGAAAGCTAAAAAGATGACCTTACCCCAGCCGTGTTTGCAGCTACGAACTTCTgcaggaaagaaaatgaatttcATAATGAGTATGAAACAGTGAGAATCAAACCATTTTCAAAAATGAACcgatttcaaataaaaacaaaaatccttACAGTGAATGTTGTTGGTTTGCGGGcagttgttgttcttgtttttaCTGGAGTTGTCGTATGGGATGTTTTCGAAGTATAGTGGTGGGAGGATCCTCCTCCATCTGTTGTAGAAGTTATTGTAGAGGTGGTGGAAGTGGTTTCCTGGGCTTCTGAAGCATTGGTAAGGCTTTGTTCAATTCTTGAAGCAGTGGTACTGGTGGCTTGACTTCCCGGAGCAGTGGTACTGATGGCTTGACTTCCCGGAGCAGTGGTACTGATAGCTTGACTTCCCGGAGCAGTGGAACTGGTGGCTTGACTTCCCGGAGCAGTGGAACTGGTGGCTTGACTTCCCGGAGCAGTGGAACTGGTGGCTTTACTTCCCGGAGCAGTGGTACTGGTGGCTTTACTTCCTGGAGCAGTGGTACTGGTGGCTTTACTTCCTGGAGCAGTGATACTGGTGGCTTTACTTCCTGGAGCAGTGGAACTGGTGGTGAGATTTTCCCGAGCAGTGGTACCGGTGTTGGAATTTTTCCGAGCAGCTTCAGTGGTGATGAAATCTCTGGCAGCCCCGTTTAAATTGTTCTGATCAGAAACCATATCTGAACCTCTGGTATTAGGTGATGTCAGGATACTGCTGTATGTAGCATTTAAAATACTGGTAGTATATGTACTTTGTTTATCTAATGGTGAGATGGTGGTGATTCTAGGAGGTTGGGCAGAGGTTGTCTCAGTGGCAATGTGTTGACTAGATGTTGGTCCTGTAGCACTGCTTCCAGTAGAAAGAATTTGGTTTGTTGGTGTTACTGCTGTTGAATTTGTTGGTAGTTCAGTTAGTGACGTATTTGCAGTGTATAATGCTGTTGTATCTGGGATGCTGCTAATAGGTTTTGAAGTGAATTGGCTTTGAGCTGTGCTAGCCACTGTGCTAGCCACTGTGGTACTGGTATTAGCGGTGTCTTCAGCATATGCACCTTGGAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331392 lncRNA downstream 48603 9336336 ~ 9337530 (-) True G279588
TU331172 lncRNA downstream 192130 9193616 ~ 9194003 (-) True G279382
XR_004579873.1 lncRNA downstream 687342 8698430 ~ 8698791 (-) True LOC117599455
TU330836 lncRNA downstream 773791 8612118 ~ 8612342 (-) True G279064
TU330707 lncRNA downstream 995574 8389498 ~ 8390559 (-) True G278963
TU331436 lncRNA upstream 94346 9484093 ~ 9484948 (-) True G279620
TU331437 lncRNA upstream 95320 9485067 ~ 9485769 (-) True G279621
TU331440 lncRNA upstream 128239 9517986 ~ 9519727 (-) True G279624
TU331441 lncRNA upstream 130086 9519833 ~ 9520078 (-) True G279625
TU331457 lncRNA upstream 143475 9533222 ~ 9533421 (-) True G279641
XM_034313366.1 mRNA downstream 27083 9350878 ~ 9359050 (-) True LOC113531956
XM_026923675.2 mRNA downstream 39087 9338768 ~ 9347046 (-) True LOC113532331
XM_026923676.2 mRNA downstream 39090 9338768 ~ 9347043 (-) False LOC113532331
XM_026923677.2 mRNA downstream 39090 9338768 ~ 9347043 (-) False LOC113532331
XM_026922951.2 mRNA downstream 94724 9289095 ~ 9291409 (-) True parietopsin
XM_026922643.2 mRNA upstream 2282 9392029 ~ 9423268 (-) True mkln1
XM_026923453.2 mRNA upstream 170164 9559911 ~ 9593266 (-) True asb13a.2
XM_026923304.2 mRNA upstream 204711 9594458 ~ 9600035 (-) True asb13a.1
XM_026923063.2 mRNA upstream 210830 9600577 ~ 9615300 (-) True gdi2
XM_034312996.1 mRNA upstream 227661 9617408 ~ 9623595 (-) True ankrd16
TU331209 other downstream 177570 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 576795 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 1166453 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1318056 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 1792325 7593727 ~ 7593808 (-) True trnal-aag_11
trnay-gua_2 other upstream 232786 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 880010 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 1605358 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 1849188 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 2196557 11586304 ~ 11588024 (-) True G281074

Expression Profile