RNA id: TU331440


Basic Information

Item Value
RNA id TU331440
length 1387
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G279624
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9517986 ~ 9519727 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccagtagCGCAGTTTGGTGTTTACATCAAAGACAAGAAAAGACAAGACCCATTTTCAGATGCATATCTTACACAGATCTTTATTGTCCCTTTAATTATGTTCTCTTTATACAGCAAACAGATTTACAAGCTCACTTCACACTTCAACACAGACAACACATCTCTGTCTTTTATACAAACTATTATGTTCTTgtgacttttttccccacacaacATTCACTTTTGCCTTTCTTTCTACATGCTTTTCATCCTTCCTCGTAAACAACGCTCACTGGCTTTTCACCAATGCATCCAACATTCGTGCTTTGTTCAGAACACTAcgaacaaaaaccaaaaactgaTTATGCGCAGTATCTAGAATCAAAGTCAGACTCTTCTCACTCAATGCAATTCAGAATTCTTATAAACAACATATCTTAAGCCCTCATACAACATACAAGTTCCTTGCCATCAGTTTCAGTGAACTCTTCTATTTATACAAGCATTTACACACCATTGTACAAGTAAAGCTCCATGCAAGATGATACATTGAAAATTTATCCATTTCCTGTTGGgagttcttttaaaaaaaaaaaaaaagagctacagTAAATTTCTGattgagaatatatatataaaaaaaaaggtaacatttaattacaaaccaaattaataataataataataatacaataataccaAACTAACAGTAAACAGGGCTTGTGTGATCTCATGCTCACTCTCACACTGGTCACCAAGTGAaagcgtgtgcatgtgtgtaaaacacttCTTGAGATGCATGCAGTTAACCCTTGAGAATACTGCATCTCCCTGGTCCGGATTTGTTCCCCATGGGTCggcttggagtgtgtgtggggattAGAGGGGATATAGCTGCCATTGAggacagtaacacaaacactgctgaGGAACCACAGGGTTCCAACATACACATAAATACAAGTCCGCTCTGGGACGAGCTTTTAGTCCATGCAGAGCCTGAGAGCTCTCTACACCATGGTTTCCTTCCTCTTGCCCAGAGAGCAGAGCATGCGCTTGTCCTTTTTAGATTTCCTTGGCGAGCTAGATGATGTGGATGACGACGATGACGacgatgaggaggatgaggaggatgaggaggaggatgtaGAGGTGGTGGAAGGTGTGGGGCTGGGAGGCTCATGGCTTTGAGGCTGGTTCTCGTCCGTCTCCTCCATGTGGACGATTGTGGAAGCTGTGGAGGAGCGGCGACCAGAGCAGGTGTCAGTGGAGGCGTCGCTCTGGATGACAGACATGGCACTGCGCAGGCAGTTGAGCCACTGCTGCTTGTGGAAAATGTCGTTGacttgaagtgtgtgtgactgaccCTGCGCCGGGTCCTGGAAACGCACACGGAAGATGTTCTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331437 lncRNA downstream 32217 9485067 ~ 9485769 (-) True G279621
TU331436 lncRNA downstream 33038 9484093 ~ 9484948 (-) True G279620
TU331406 lncRNA downstream 128239 9386133 ~ 9389747 (-) True G279592
TU331405 lncRNA downstream 130197 9386133 ~ 9387789 (-) False G279592
TU331392 lncRNA downstream 180456 9336336 ~ 9337530 (-) True G279588
TU331441 lncRNA upstream 106 9519833 ~ 9520078 (-) True G279625
TU331457 lncRNA upstream 13495 9533222 ~ 9533421 (-) True G279641
TU331545 lncRNA upstream 104872 9624599 ~ 9625119 (-) True G279728
TU331548 lncRNA upstream 107610 9627337 ~ 9629153 (-) True G279730
TU331669 lncRNA upstream 284451 9804178 ~ 9804403 (-) True G279832
XM_026922643.2 mRNA downstream 94718 9392029 ~ 9423268 (-) True mkln1
XM_034313366.1 mRNA downstream 158936 9350878 ~ 9359050 (-) True LOC113531956
XM_026923675.2 mRNA downstream 170940 9338768 ~ 9347046 (-) True LOC113532331
XM_026923453.2 mRNA upstream 40184 9559911 ~ 9593266 (-) True asb13a.2
XM_026923304.2 mRNA upstream 74731 9594458 ~ 9600035 (-) True asb13a.1
XM_026923063.2 mRNA upstream 80850 9600577 ~ 9615300 (-) True gdi2
XM_034312996.1 mRNA upstream 97681 9617408 ~ 9623595 (-) True ankrd16
XM_034312997.1 mRNA upstream 97681 9617408 ~ 9623591 (-) False ankrd16
TU331209 other downstream 309423 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 708648 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 1298306 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1449909 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 1924178 7593727 ~ 7593808 (-) True trnal-aag_11
trnay-gua_2 other upstream 102806 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 750030 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 1475378 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 1719208 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 2066577 11586304 ~ 11588024 (-) True G281074

Expression Profile