RNA id: TU331457


Basic Information

Item Value
RNA id TU331457
length 200
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G279641
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9533222 ~ 9533421 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tagccatcacaatttggtccttgtcaaagtcactctgatcgttacgcttgcccatttttcctgcttctaacacatcaacttcgagaactgactgttcacttgatGTGTACATgggaagtggtggctcagtggttaaggacaTGAGTTTAAATGCCAGCTATGCCAAGCTACCACAGTTGTTCCTTTGAGCAAGAtcttta

Function

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0071855 neuropeptide receptor binding molecular_function
GO:0031841 neuropeptide Y receptor binding molecular_function
GO:0031843 type 2 neuropeptide Y receptor binding molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331441 lncRNA downstream 13144 9519833 ~ 9520078 (-) True G279625
TU331440 lncRNA downstream 13495 9517986 ~ 9519727 (-) True G279624
TU331437 lncRNA downstream 47453 9485067 ~ 9485769 (-) True G279621
TU331436 lncRNA downstream 48274 9484093 ~ 9484948 (-) True G279620
TU331406 lncRNA downstream 143475 9386133 ~ 9389747 (-) True G279592
TU331545 lncRNA upstream 91178 9624599 ~ 9625119 (-) True G279728
TU331548 lncRNA upstream 93916 9627337 ~ 9629153 (-) True G279730
TU331669 lncRNA upstream 270757 9804178 ~ 9804403 (-) True G279832
TU331737 lncRNA upstream 357211 9890632 ~ 9891233 (-) False cracr2ab
TU331824 lncRNA upstream 413910 9947331 ~ 9947536 (-) True G279967
XM_026922643.2 mRNA downstream 109954 9392029 ~ 9423268 (-) True mkln1
XM_034313366.1 mRNA downstream 174172 9350878 ~ 9359050 (-) True LOC113531956
XM_026923675.2 mRNA downstream 186176 9338768 ~ 9347046 (-) True LOC113532331
XM_026923453.2 mRNA upstream 26490 9559911 ~ 9593266 (-) True asb13a.2
XM_026923304.2 mRNA upstream 61037 9594458 ~ 9600035 (-) True asb13a.1
XM_026923063.2 mRNA upstream 67156 9600577 ~ 9615300 (-) True gdi2
XM_034312996.1 mRNA upstream 83987 9617408 ~ 9623595 (-) True ankrd16
XM_034312997.1 mRNA upstream 83987 9617408 ~ 9623591 (-) False ankrd16
TU331209 other downstream 324659 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 723884 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 1313542 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1465145 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 1939414 7593727 ~ 7593808 (-) True trnal-aag_11
trnay-gua_2 other upstream 89112 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 736336 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 1461684 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 1705514 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 2052883 11586304 ~ 11588024 (-) True G281074

Expression Profile