RNA id: XM_026923841.2


Basic Information

Item Value
RNA id XM_026923841.2
length 3881
RNA type mRNA
GC content 0.42
exon number 18
gene id cracr2ab
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9878481 ~ 9892386 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACGTCCTAAATCGCACGTCCATACCTGTTACACTAAATAACATGAATAGTAGACTAGAATAGTGGACTAGCCCCCCTGTTAGAGGTGATAATCTGGCTGTTCTGAGACATTAGTTATTGCAGGAGTTTGCTATTTAGGACTTGGCCTTTATCATgactcagggaaaaaaaacaaacggaGGCTGTGGGTTTTCGTCACTATGGAAACCGCGACGCAGCGACCGCGAGCGCAACTGCTGTGTCCTCGCGCTCAGTTGTAGCAGCTGATAGCCTTCAGTGACAGAAAACTGGCAGAGTAAGAAAACTAGACAAAATGCCATGGGACATATTTAGTTTCTTTAAGTTGTGTGTTCCATTTTTGTAGACGAATAGATAATTTTTTGTAgtgtatatttacttttttaacttCACTTTAAATTGTAATAAGATATTACAGGAAATTTAGCAGTTGCAGACCACACAAGCCTCTTCCTGTTGCCCCGTCTATGATGAGcctggaagagaaatggatCGAAATGAAGAATCGGATTCTTTGAAATAATGTTCTTTGCTGTGGATTATATCAACTTTCTACTATGACATCTCACATTAACAGACGATTAGGGAGTGGGAAGTATGTCTGAATTCCTGAATCACAAGGCCATGAAAGTCGTCTACAAAAGTCCAGATAACGAAGACATACAGCCAGAGCCTGAGATGATGAAGGATCTGGAGAGAAGGGGATCAGGCCTGGTACTTGCTTCACAGCTGGAGAAGATCGATGAATTCTTCCAGATCTGTGACAGTGAAGGCAAGGGTTACATTACGCCCACTGATATGAGGagGTTGAACAAAGAATTACCACTCTCTGCAGAAGAACTGGAGAATGTCTTTGACTCATTAGACTTGGACAGAAATGGCTATCTTACTCTAGAAGAGTTCTCCTCTGGATTCAGTAAATTTCTGCAGGGATGCAGAATGAGTCAGGTGGAATATCAGTTCACGGGTCTCTCACAGGACTCTCCAGAAGCTCTATATCAGAATGATCCACAGGATTATGAGGAAGAAAGACACTTTAGCACTCTGATGGAAAGCCTCGGCGCTAGCAATATCTTTGAAGATCCCAGTGAAGTGCGCACTCTGTGGACTCAGCTAAGAAAAGATGAGCCACATCTCCTGTACAACTTTGAAGATTTCCTGGCTCGAGTCACATCCCAGATCAGAGTGGCCCAACAAGAGAAGAGTGAGATGGAAAGTGCCTTGAGAAAGAAAGCTGCAACACACAATGGTGAAATCCGGCAGTTGTACGAGGAAATGGAGCAACAgataaaaaatgagaaagatcGACTGAGTCACAAGGACTTCAGAAGTCAGGATCTGCTACAGCAGTTGAGCAGCAAAGAGCAAGAACTTGAGAAGCTCTTCCTCAAACAGAGGAGGTTAGAGCAACAGTGTCAAGAGCTGCACAGTGAACACCAGGAGAGTCAGGTGGAGAAcatgaaactgaaaatgaccAATCAGGAGCTCTCAAGCGAACTGGAACACACCTGTCATGAGCTGTCATTGGCTCAGGAGCAACTGGCCAAACTGCAGGAGCAAGGCTTGAGACAGCAGcgagaaaaagaaatGGAGGTGTACAGAATCGCAGAgagactgcagagagagaaacaaaaccTAGCTGATCAATTAGACCTGCTCAGagaaatgaataaacatttaagaGATGAAAAAGACTCTTTGaaaTGCAACAACTTGTTAAAGAAAGCCACCTTTGAACAGGGACCAGCCTCAAACTTAATTGTTCATTCTGACCAAAAGCAGACTTCAGAAAGTGAGGCTGGTACAGAAGTGACTCAGCACCCAAACAGGAAGACCTCGTCTCGTAGCTCTAGCCCACACTCTGCGTCCGGAGATGATGGGATGATGAGAGCGGCCAAGCATACTGCGAGTGCAGACGGGAACTCAGTGACTGAGAACCCAGACACCAATGCAGTGGATTCTCCACCATTCCACAGGGTTATCTCCATCGAGGAGGACCACCTCCCACACCTGCTAGAAGGAGAACCCTATCCTCTCTTCCACCAGATGAATGAGGAAGAAGAAGTGGCCCAGATTGATCTGCAGATGAGCCCCATGTGTCCCTTAAACATGTCCCTGCCCTCTGTGACCAGGGGCCAGCCAGTAGGCAAGGAGGCTTTGCAGAAGGGTCCAGTGGAGAGTTCTGTGTCCACGCCACAGCGCCTCTTTAAAGTCATTCTTGTGGGCAACTCAAGCGTGGGTAAAACTGCTTTACTGCACCGTTTCTGTGGTCATTTCCACATGGACACTACAGCCACTGTGGGCATTGACTACAGTGTTCGGACTCTGAATCTGGGGGACAGTCATGTGGCTCTGCAGCTGTGGGACACTGCAGGACAAGAGAGATTTCGAAGCATCACCAAGCAGTTTTTCCGCAAGGCTGATGGCGTGGTGGTGACCTATGACATCACTCTGCGTGACAGCTTTAAGTCTGTGCGCTCCTGGCTGGTGAGCATACAGGAAACAGTCGGGGACCCAGTTCCCATCATGCTTCTGGGCAACAAATCAGACAGGGAGAGTATGAGACAGGTGGCAACTGGGGAAGGGGAAAAGCTTGCTAAGGAAGCACGTTTGTTGTTCTACGAGTGCAGTGCTTATACAGGCTACAATGTGCTAGAAGCCATGGTACACCTAGCCAGAGTGCTGAAGGAGCAGGAGGACAGAGTTTGGGAGAACCCAGTGGGGCTGGTGGATCAACCAGTGAAGAAGAAAACCTGCTGCATgtgaccacaaacacacacacacacacacacacagacacatacacacacaggtatattAAATGTGTACCATATGAGAAGGAGTGCTGGAGGTGAACAGCTAAGCAGTAATTAGGAAACGTTATCTGAATCAAATCCATCTCTTCTGCTCTGCGATTTCattatgttgttgttgctggGTTAATAGACTGACGAAAGTGTTCTTTACTCAGGTCTATGGACTCATGTGTCAGTAAGTGGTAGAATAAACTAGTGAGATACAGTACAGTTGATTCTGTTTAGGATTCAAATGCAACTACATGTAGAGCAACATCTACTCACTACAAGCATGAATGCCATGTATGAGCCTTGGTGAATAAGCATGAATAGGCATGAGTAGGCATGAAAGTAACAGACCAACATGCCTCCTAAGATTCTCTGTCTAAATTTGGAAGTAAAATATTTGAGGTGTAAATATTTAGTTATGTACTAAATTGTTAGttatgtacatacatattttttctACTGTCATTCCATGTACagatatatttgttatataaaatttGTTATACAAGATGTATAGAATTATGGTGTAATacaacatttgttttttatgtatatatatttctaatataaattaaaactgggttaataaatgtaatcaaCTAGATGCACATATCGTTTTCACATCTCTGATTTATTTACCACTTCTAGCGTCCCAAATTCTTaacaaatgtttgcataaaatgtttgaattaggccaaagaaacatatttttaattaaaaatggaaaaaacccTTGAAAAATGAtcatgaggaataaaacatgccagttacattataaatcattcaaccacaaaaaataacagaagtaataattaaatttttagtAATAATGAGgcataaatgaaatatttgaaaacaaGCAATCAAATGTCTCACTTTTAAAATCTTTCTCCATGCTATCTGCTATAAGAATACTCATTCTGTAAATCCTGTTACTGTGCTCAAGTCTTTTTGGGCATGttgccttattttttttttattacattacctTGTAGATTACTATTCAACACTGTACTTGCTTTCATGCTTTCTTACTAAAATAAAGGACAACTAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331669 lncRNA downstream 74078 9804178 ~ 9804403 (-) True G279832
TU331548 lncRNA downstream 249328 9627337 ~ 9629153 (-) True G279730
TU331545 lncRNA downstream 253362 9624599 ~ 9625119 (-) True G279728
TU331457 lncRNA downstream 345060 9533222 ~ 9533421 (-) True G279641
TU331441 lncRNA downstream 358403 9519833 ~ 9520078 (-) True G279625
TU331824 lncRNA upstream 54945 9947331 ~ 9947536 (-) True G279967
TU331860 lncRNA upstream 111955 10004341 ~ 10004812 (-) True G280002
TU332117 lncRNA upstream 185700 10078086 ~ 10078356 (-) True G280228
TU332122 lncRNA upstream 195463 10087849 ~ 10088120 (-) True G280233
XR_004579870.1 lncRNA upstream 363586 10255972 ~ 10296198 (-) True LOC113532274
XM_034313140.1 mRNA downstream 24152 9755585 ~ 9854329 (-) False tspan11
XM_026923486.2 mRNA downstream 24152 9826057 ~ 9854329 (-) False tspan11
XM_034313138.1 mRNA downstream 24152 9826057 ~ 9854329 (-) False tspan11
XM_034313139.1 mRNA downstream 24152 9832095 ~ 9854329 (-) False tspan11
XM_026923489.2 mRNA downstream 24153 9824044 ~ 9854328 (-) True tspan11
XM_026923293.2 mRNA upstream 2699 9895085 ~ 9897952 (-) True ccdc59
XM_026922867.2 mRNA upstream 114812 10007198 ~ 10015790 (-) True pik3cg
XM_026922868.2 mRNA upstream 114812 10007198 ~ 10015789 (-) False pik3cg
XM_026922569.2 mRNA upstream 555279 10447665 ~ 10450902 (-) False lmod2b
XM_026922568.2 mRNA upstream 555279 10447665 ~ 10450895 (-) True lmod2b
trnay-gua_2 other downstream 255862 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 669918 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 1069143 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 1658801 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1810404 8053088 ~ 8068077 (-) True G278634
TU332243 other upstream 377371 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 1102719 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 1346549 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 1693918 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 1765504 11657890 ~ 11660327 (-) True G281092

Expression Profile