RNA id: TU331824


Basic Information

Item Value
RNA id TU331824
length 206
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G279967
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9947331 ~ 9947536 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgtAGTGAGAGTAAAGGAgaaatattaatgctacagtatacagagACATGCTATACaattgtgcttccaactttatggcaacagtttggagaaggccaaTGTATAggtatgatggtcagatgtccatgTACTTTTGTCAATATAGTGCATGCCCACATACATTTAGCCATTTAGTGTATTCAGAACAAGCATAatcagacaaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331737 lncRNA downstream 56098 9890632 ~ 9891233 (-) False cracr2ab
TU331669 lncRNA downstream 142928 9804178 ~ 9804403 (-) True G279832
TU331548 lncRNA downstream 318178 9627337 ~ 9629153 (-) True G279730
TU331545 lncRNA downstream 322212 9624599 ~ 9625119 (-) True G279728
TU331457 lncRNA downstream 413910 9533222 ~ 9533421 (-) True G279641
TU331860 lncRNA upstream 56805 10004341 ~ 10004812 (-) True G280002
TU332117 lncRNA upstream 130550 10078086 ~ 10078356 (-) True G280228
TU332122 lncRNA upstream 140313 10087849 ~ 10088120 (-) True G280233
XR_004579870.1 lncRNA upstream 308436 10255972 ~ 10296198 (-) True LOC113532274
TU332242 lncRNA upstream 347468 10295004 ~ 10296121 (-) False LOC113532274
XM_026923293.2 mRNA downstream 49379 9895085 ~ 9897952 (-) True ccdc59
XM_026923841.2 mRNA downstream 54945 9878481 ~ 9892386 (-) False cracr2ab
XM_026923840.2 mRNA downstream 54945 9878481 ~ 9892386 (-) True cracr2ab
XM_026923842.2 mRNA downstream 56258 9878481 ~ 9891073 (-) False cracr2ab
XM_026923843.2 mRNA downstream 56448 9878481 ~ 9890883 (-) False cracr2ab
XM_026922867.2 mRNA upstream 59662 10007198 ~ 10015790 (-) True pik3cg
XM_026922868.2 mRNA upstream 59662 10007198 ~ 10015789 (-) False pik3cg
XM_026922569.2 mRNA upstream 500129 10447665 ~ 10450902 (-) False lmod2b
XM_026922568.2 mRNA upstream 500129 10447665 ~ 10450895 (-) True lmod2b
XM_034313381.1 mRNA upstream 504042 10451578 ~ 10461046 (-) True asb15b
trnay-gua_2 other downstream 324712 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 738768 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 1137993 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 1727651 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1879254 8053088 ~ 8068077 (-) True G278634
TU332243 other upstream 322221 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 1047569 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 1291399 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 1638768 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 1710354 11657890 ~ 11660327 (-) True G281092

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1233691 True 226 lncRNA 0.46 1 NC_048576.1 51130610 ~ 51130835 (+)