RNA id: TU331860


Basic Information

Item Value
RNA id TU331860
length 448
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G280002
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10004341 ~ 10004812 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGATTGGCTAGGAAATGTGCACACTGAAAGACCACACTGGTGGTCCAAAACATAAGGAAGTAGAACACCTACATTTTTAAGTGCTAAATTTGTTTGGGcgaaatggcaaaaaaaaaaatgctctagATGTCTATACCACCTGATTTCTCTCAGgagatctttaataaataaagcttaCTGGTGAAATGTTAGACTTCGTAGAGTTAAATGTGTTTCATTGGTGCAAAAACAGATTTATGTACACATGCATTTGGTGAAGTAAGCATTTTGTGTTCCTGCAATACAAATTAAATCTGTTATCTTCACCGATTTCAGTCTGTGTAAAGCTTGTCATAAACTATTCCTCGttttggaaataataataataataataataataataatacagcaatttgttgaacagaaaaaaattaagaccAAGGTGAATTATAATTTTGTGAAATATG

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04664 Fc epsilon RI signaling pathway
ko04666 Fc gamma R-mediated phagocytosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331824 lncRNA downstream 56805 9947331 ~ 9947536 (-) True G279967
TU331737 lncRNA downstream 113108 9890632 ~ 9891233 (-) False cracr2ab
TU331669 lncRNA downstream 199938 9804178 ~ 9804403 (-) True G279832
TU331548 lncRNA downstream 375188 9627337 ~ 9629153 (-) True G279730
TU331545 lncRNA downstream 379222 9624599 ~ 9625119 (-) True G279728
TU332117 lncRNA upstream 73274 10078086 ~ 10078356 (-) True G280228
TU332122 lncRNA upstream 83037 10087849 ~ 10088120 (-) True G280233
XR_004579870.1 lncRNA upstream 251160 10255972 ~ 10296198 (-) True LOC113532274
TU332242 lncRNA upstream 290192 10295004 ~ 10296121 (-) False LOC113532274
TU332301 lncRNA upstream 414106 10418918 ~ 10513153 (-) True G280384
XM_026923293.2 mRNA downstream 106389 9895085 ~ 9897952 (-) True ccdc59
XM_026923841.2 mRNA downstream 111955 9878481 ~ 9892386 (-) False cracr2ab
XM_026922867.2 mRNA upstream 2386 10007198 ~ 10015790 (-) True pik3cg
XM_026922868.2 mRNA upstream 2386 10007198 ~ 10015789 (-) False pik3cg
XM_026922569.2 mRNA upstream 442853 10447665 ~ 10450902 (-) False lmod2b
XM_026922568.2 mRNA upstream 442853 10447665 ~ 10450895 (-) True lmod2b
XM_034313381.1 mRNA upstream 446766 10451578 ~ 10461046 (-) True asb15b
trnay-gua_2 other downstream 381722 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 795778 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 1195003 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 1784661 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1936264 8053088 ~ 8068077 (-) True G278634
TU332243 other upstream 264945 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 990293 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 1234123 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 1581492 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 1653078 11657890 ~ 11660327 (-) True G281092

Expression Profile