RNA id: XR_004579870.1


Basic Information

Item Value
RNA id XR_004579870.1
length 1657
lncRNA type inter_gene
GC content 0.43
exon number 6
gene id LOC113532274
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10255972 ~ 10296198 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTAGTGGATAGATGTTGAGGTGCCTGTGTCTTTAAGCTACAGCAACGGTGTTGTGTCGCACCTGTATGACATCACTAGATGCGACTGATTTGTGACAATTGTTAGCCTCGGAGCTTCTTTAAAAGCACGGCGTTGGCGATGCTAAGgAGTTGGGGGACGCCGGCAGGGAGGCTTGGCACCGGGTGGCTGGgtacctgtgtttgtgtgtgtttcacctttCTGGCAGTGTAGTGTCACCTGGGTGTGctgtgcagtgtatgtgtgcgctTCACGTGTGGTCTTTTTGGACCCTCCTTCCAGATCGCCTCCCTGTGctttttcacagtttttacgccggatgccctacCTGACGCAACTCTATCCAATTTTATCCTGGCTTgtgaccagcactgagagcgcactgctGCACGCAAGCCCAGTGCCTGAGGTTGGTTGGACCCTAGAAGTTATTAATGAGAATAAAAGGTGTCTGAGGACTTACTGTGATTGGCCACTGCAGAACAGTCATTACAGACACAGCCCAGAGGTTAAATAGACACTCCAAAACTCAACCATGCAAAATTGTCGAGTGGAATATTTATGGAAACATTCTATTTGAATGAGGCCTGCCCTTTTCTGCAAGGAAACGTAATCCATCCAGGACACACAGTGAATAAGTATACAGAAAATGTTATCTTTCTGCACAGTTAAAGTAAAAATTAATGCACCTTTTGACAAAGAATAAGATGAAAAGTCAGGTTTCCAAAGACATGTAAATGTTTGTTAACAGTGGCTTGCTAAATGTtgttaaatggataaaactttCATGGCATCTTTTCTTCCTCAGATACGAGTACAAATTagttccaacacacacacacacacacacacacacacacacacacacacacacatacacatgaatACAAAACCGACActcacacaaatatacactcGTGTCAAGAGTGCTATTGTACCGTGCCCTCATCTGACTCCATTAACGGAAAGTGGTTGGGATCGTGACCTACACATCATTAACAAGATGTGGTCCCGTTGCCGCAGTGTGTGAGACGAACACAGaagaggtaatatcattaactgtCTTGTTAGATACCCCTCCCCCACACAGAATGTTCATAGAGTGAGCATGGGGCatcgtgattcctgccccagtgggccaATGTTAGCTTGCATTGCTGTTCCCATttgttcccatttttgaccactagttGCAATAATAGCTCTACTGAACTAAACAGGGCACACAGCATGCTCCCCCATGATTGTGCAACATTTAGGAATGGTAAATAAATCAATAGAACATCAGCTTATATCcgtcaaataacattttttaaatcattggaGTAAATGCCACACAGACAGTCACCTgggctcaggattgaaccctggAGCTTTGAGGAGCACTCCACTATGCGTTTGTATCATATAATGTGAATTGTATTATTCTATTAAGCAAAGAAAATGAGGAAGTggtataaaattttataataaatattttgttttagacctgtttttatttactgaaaaaaaataaccagTAGTCATTTCTTGGCATTTATATTCTGCTGGACAATATGTCATAACCCGAGGGAGCCACAGAATAATCTCCTTACAGGAATATCAACTGAGGACACTTTGTGCTTGTTTGACGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332122 lncRNA downstream 167852 10087849 ~ 10088120 (-) True G280233
TU332117 lncRNA downstream 177616 10078086 ~ 10078356 (-) True G280228
TU331860 lncRNA downstream 251160 10004341 ~ 10004812 (-) True G280002
TU331824 lncRNA downstream 308436 9947331 ~ 9947536 (-) True G279967
TU331737 lncRNA downstream 364739 9890632 ~ 9891233 (-) False cracr2ab
TU332301 lncRNA upstream 122720 10418918 ~ 10513153 (-) True G280384
TU332306 lncRNA upstream 134433 10430631 ~ 10435846 (-) True G280389
TU332320 lncRNA upstream 167756 10463954 ~ 10465630 (-) True G280398
TU332265 lncRNA upstream 172488 10468686 ~ 10470375 (-) True G280360
TU332463 lncRNA upstream 480565 10776763 ~ 10777897 (-) True G280527
XM_026922867.2 mRNA downstream 240182 10007198 ~ 10015790 (-) True pik3cg
XM_026922868.2 mRNA downstream 240183 10007198 ~ 10015789 (-) False pik3cg
XM_026923293.2 mRNA downstream 358020 9895085 ~ 9897952 (-) True ccdc59
XM_026923840.2 mRNA downstream 363586 9878481 ~ 9892386 (-) True cracr2ab
XM_026922569.2 mRNA upstream 151467 10447665 ~ 10450902 (-) False lmod2b
XM_026922568.2 mRNA upstream 151467 10447665 ~ 10450895 (-) True lmod2b
XM_034313381.1 mRNA upstream 155380 10451578 ~ 10461046 (-) True asb15b
XM_034313222.1 mRNA upstream 174338 10470536 ~ 10512149 (-) False ptprz1b
XM_026923202.2 mRNA upstream 174338 10470536 ~ 10512148 (-) False ptprz1b
trnay-gua_2 other downstream 633353 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1047409 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 1446634 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2036292 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 2187895 8053088 ~ 8068077 (-) True G278634
XR_004579975.1 other upstream 698907 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 942737 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 1290106 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 1361692 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 2284725 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile