RNA id: TU332306


Basic Information

Item Value
RNA id TU332306
length 1320
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G280389
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10430631 ~ 10435846 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacgtatatatgtgctaaataattacactgaaacagtatttaaatgttctgtttctACAACAGCAACAACCTCCAAACTCTTGtgttaaaatattgcaaaagaTACTGTTACCATTTAAGATCTGAAAACTATCTTGATATTCAGTTTTGGATTTATCACCTACCATTAAAATGGACATTTAAGGTAAGACCTTACTTAGCAGCATCACTGATTTATAAAGTGGAGCCAACTTGCCCTGATTATTAAGTTTCATATCTAACAAATTTCAGGCCGAGCaataaatcaacacacactAGTCTGGGACATCAAAAGTTAGACGCTGCAGATGTAGATTGTAAAGTTGTTCTCACAAACTGCCCAAGGAAGTACTTGAAAGATTTTAAGCATAGAACTGATGCAAAGTCGAGTTACTGGACTGTGTAATTTTAACAGCTTGAAGGTAAAGAACCCTACGAACACACAAACAAGCCAGTATGGTGTAATATAGTGTGTCTCCCTTATCCCttagcatgcacacacacacacacacacatacacacacttaccttGTCTTCGGAACTCACTCTTTACAGCCTCCACGCCTCCTTTTTTCTCGATAAAGTCGTAGATAACCTTTGACGTCTCCCTGTCTTTTAGCTGGGCTTCAGAAATACCGCACACGTCAAACAGGCTCTTCAGGTCTGGGTCTAGATTATTAAGCTGGGAATATACAAGAAGCCAAATAACTGGTAAATAGTaatgaaaaaacataaaacaaaaaggtgATATTTTACCACTCAACAACGGAAAACTATCAGTTTGCATTATTTGGCACAATATGTAACAAATATGCATATCGGTGATCAGTATTAATgcagcaaattgcttttttttttttacatttgcgTTGCACTGCACTATGTTATCTATGGTCACAAAAACACCAACGCTATAAAACGCCACAATCTTGCGCCATGTTCATGAAAATAGTGACCTCTATCTTAagatgaacacattaatatgaTATATAGTGATAAAATCACTCTCCTGTTGTGAACTATTTAAAAAGTGATCTACCTGCCCTATAAATTGGACTCAATGCAAAGCAATTACAGGGACTTTGCATagtaaacacaaataaatataatgaagaTAAAATTGATGTATAAAATGATAGAAGTGACTTTAAAAAGAGACAGGCGGTCACAAGACAGACGCAGTGCTTACCAGTTTTCCTGTGTCTTCTCGTTGCCAGCTCGTTGGTTGCCACTCTGAATTGTTTGGCCTCTTGCTCATCAGCAAAGTTGAAGCCAATCTGACACTTCTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579870.1 lncRNA downstream 134433 10255972 ~ 10296198 (-) True LOC113532274
TU332242 lncRNA downstream 134510 10295004 ~ 10296121 (-) False LOC113532274
TU332122 lncRNA downstream 342511 10087849 ~ 10088120 (-) True G280233
TU332117 lncRNA downstream 352275 10078086 ~ 10078356 (-) True G280228
TU331860 lncRNA downstream 425819 10004341 ~ 10004812 (-) True G280002
TU332320 lncRNA upstream 28108 10463954 ~ 10465630 (-) True G280398
TU332265 lncRNA upstream 32840 10468686 ~ 10470375 (-) True G280360
TU332463 lncRNA upstream 340917 10776763 ~ 10777897 (-) True G280527
TU332558 lncRNA upstream 347515 10783361 ~ 10784293 (-) True G280615
TU332595 lncRNA upstream 470327 10906173 ~ 10908630 (-) True G280640
XM_026922867.2 mRNA downstream 414841 10007198 ~ 10015790 (-) True pik3cg
XM_026922868.2 mRNA downstream 414842 10007198 ~ 10015789 (-) False pik3cg
XM_026923293.2 mRNA downstream 532679 9895085 ~ 9897952 (-) True ccdc59
XM_026923840.2 mRNA downstream 538245 9878481 ~ 9892386 (-) True cracr2ab
XM_026922569.2 mRNA upstream 11819 10447665 ~ 10450902 (-) False lmod2b
XM_026922568.2 mRNA upstream 11819 10447665 ~ 10450895 (-) True lmod2b
XM_034313381.1 mRNA upstream 15732 10451578 ~ 10461046 (-) True asb15b
XM_034313222.1 mRNA upstream 34690 10470536 ~ 10512149 (-) False ptprz1b
XM_026923202.2 mRNA upstream 34690 10470536 ~ 10512148 (-) False ptprz1b
TU332243 other downstream 134510 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 808012 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1222068 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 1621293 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2210951 8218561 ~ 8219680 (-) True G278912
XR_004579975.1 other upstream 559259 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 803089 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 1150458 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 1222044 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 2145077 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile