RNA id: TU332595


Basic Information

Item Value
RNA id TU332595
length 2390
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G280640
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10906173 ~ 10908630 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttattgaattttttttggtcTATACACATACAAAGTAGGCCTACTGtgcacatttattttctgtattctgtaatgaagaaatgaaaaaataatgaaaatatgaaaataattactATATTGAATATCAAACAGTACATAAaccaataaaacattaaatcaaataatctattttcatatttaactCAGTGCACCTtggtgtaattttttaaaaaaaacagtacgtGGCTTCAGGCATCTTGGAGAACTTCCTTGATGACGTTTTTATCAGAAACATAGTCTATTTCTTAATATggcacattatttaataaaatacaaagtctgtaaaataacattaacacactaataGAGTAGGCATAAAATAGGCATGTAAGTAagaacatttatataaaaatgtaatgtgcCTAAGACATGAAAtgttaaactttattttataaccAAACTGTTTCCAGATTATAGAGAGGTTTAGAAAAGTATTCTgacctcttacacacacacacagggtgagGTACACTGGATCTGATACactgagaaaataaatgtttttaacgtgtgtttaaaaaatagaaagaaaaatcactATAGCCAATATATGATACAATATATAGCAAAAAATAGTGGATTCTTACACTCTTGTGCTTCTAGCAAAGGGCACACAATGAATCCATAATTTTCTTGATAATTTTACCATTAGTTAGACTCAGTGATGAGAGATCAATCTTATGGCTATATAATAAAGTTTCATCACTCAGGTATGATCAGTCTATAGGCACCAAGTGACCAGGATTTATCTTAGTGTAAGCTAAGACATAGAAAAGACTACAAAATATATCAAATTGTGTATAGTGAGAATATCTGAAGTTCGGTCAAAGACAGGAAAGTAGTACACATTCTAAATTCCAACACACTAAAAAACttagatatataatataaaatatatatataacttttaaAGCCTTTTCAAATGTAAcataaagcagttttttttactCCAGTTTTGTGGACACACTGCCCTACAAAGTAAGAAATGctgacaaaaatatgaaaaggaaatataaaatgtggcCAGTATTATCTATTTACTCCACTTTAACAAAGAGTGAAGGAATGTGGAAGCAGAAGAATGCGGATGTGTGTATGGGACGAAGCGCAACAGTTAAACCCTTAAACCCTGCTTATTCCAGACTGAAGCTGTTCAATTGCTTGGTTAATAATTAACCACCTCTGAGTATTTTGGTGGCTggtatgaaagagagagagatggcagcTGAGCTTGGGCAGGAGCGCTGATACGGATGATCATCGAAAGAGACATCAGACCTCCCAGAatctacagagagaaagaaggggTGTGAAAAGCGATGCTGATATAAGTTAAAGATAAAGATATACTTTGCTTGCTtaagaatgaataaatttggtttatatgtttggATTATAAACCTCTAATGTGTAATAAAAGTAGAAATATTCTTTATGACTGTACATGTAACTTAGTattgttgctttctttattattattctattattttgACTTTAATTTTTGGTTTACCCCCCTCAATAaactcaataaaaatattttttaaaaataattgtacatGTAATATACCATAATATCATACACAAACAATCAGAGTACAAACACACTGAGGACACTGTATTTCTACATCCATTTCATGAAATGAGGCTGGGAAGGATGAAttctgttttaataaatgctcTATACTATGCTATATTCAGTTTAGACTAATAAATGAACATCCTGATACTgggttctcaaacattttcAGACTCTTCCACACTCAAACAATAAGCATCTAAGAGTCTGCTTGTCATCTGAACAAGGTTCCCATGGCTACAATTGGGAAATTTGTGGCAGGGGTTAAACTGTACACACTGTTATGAGAACAGAGCACAGAAAGCCAGAGCAAAGATACAATAGGCACAAAGCCCATGCATGCTTGTGCTAAACTGGAGAAACCTGGAAAGCCCCTGgatttcactttcatttctcTCAAACCTGTGGCTGTTTCTGGGAAAGTCACACTAATGATTCACATGTTAAGCAAATCTTTTGCGCAAACTTGACTTTTCCTTTATTGCACATTAGCAGTGCATTTCTTACCCTGAGTTGGTAGGATTTTTATAACCTCTGCTACAACACAATGTAGGCTTCTGCATAAGTCAGATTTAAAACTGAGACCCGGCTGTATGGAAAAGGCGGCTTTACACATCTAACATTCAAACAACTATGAAGCGGATAAAGCTAACTGTAATGTTATCTGTACCAGCATTTTTTTCTAAGGCGTGTTACCGTCTTGATTAATACCTCCAGGGTTATTATCATAACCAAAAGTACAATGTACTTACAGCCAGAGCTGCCAGGCAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332558 lncRNA downstream 121880 10783361 ~ 10784293 (-) True G280615
TU332463 lncRNA downstream 128276 10776763 ~ 10777897 (-) True G280527
TU332301 lncRNA downstream 393020 10418918 ~ 10513153 (-) True G280384
TU332613 lncRNA upstream 22108 10930738 ~ 10930980 (-) True G280652
TU332738 lncRNA upstream 170538 11079168 ~ 11079487 (-) False sobpb
TU332792 lncRNA upstream 261256 11169886 ~ 11172446 (-) True G280812
TU332799 lncRNA upstream 271301 11179931 ~ 11182051 (-) True G280817
TU332800 lncRNA upstream 274436 11183066 ~ 11184143 (-) True G280818
XM_026923231.2 mRNA downstream 20737 10830886 ~ 10885436 (-) False ptprr
XM_026923230.2 mRNA downstream 20737 10830886 ~ 10885436 (-) True ptprr
XM_026923233.2 mRNA downstream 51589 10830886 ~ 10854584 (-) False ptprr
XM_026923232.2 mRNA downstream 51589 10830886 ~ 10854584 (-) False ptprr
XM_026923234.2 mRNA downstream 52582 10830886 ~ 10853591 (-) False ptprr
XM_026923328.2 mRNA upstream 5004 10913634 ~ 10928416 (-) True rab21
XM_026922686.2 mRNA upstream 22717 10931347 ~ 10940102 (-) True tmem19
XM_034313018.1 mRNA upstream 22717 10931347 ~ 10939347 (-) False tmem19
XM_034313394.1 mRNA upstream 32488 10941118 ~ 10974696 (-) False LOC113532419
XM_026923839.2 mRNA upstream 32488 10941118 ~ 10974696 (-) True LOC113532419
TU332243 other downstream 610052 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1283554 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1697610 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2096835 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2686493 8218561 ~ 8219680 (-) True G278912
XR_004579975.1 other upstream 86475 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 330305 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 677674 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 749260 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1672293 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile