RNA id: TU332613


Basic Information

Item Value
RNA id TU332613
length 243
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G280652
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10930738 ~ 10930980 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acaagaaaattgaatataaatatatcatggAATCTCAGACGTGTATTGTAACATCATTGGTCACAATATCATGATATCATGATTATATCCTCACATCTCCCAGCCCCAGTGAATATTGAGTTATAGTGATATTTTACAGCTTACctttctttaaatgttctatCAACCACAGATTAAATCAGCTTGAACCTGAACAACTCATTCATTTTACCACATCATGACCTGACATGAAGTATTATACGG

Function

GO:

id name namespace
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332595 lncRNA downstream 22108 10906173 ~ 10908630 (-) True G280640
TU332558 lncRNA downstream 146445 10783361 ~ 10784293 (-) True G280615
TU332463 lncRNA downstream 152841 10776763 ~ 10777897 (-) True G280527
TU332265 lncRNA downstream 460363 10468686 ~ 10470375 (-) True G280360
TU332320 lncRNA downstream 465108 10463954 ~ 10465630 (-) True G280398
TU332738 lncRNA upstream 148188 11079168 ~ 11079487 (-) False sobpb
TU332792 lncRNA upstream 238906 11169886 ~ 11172446 (-) True G280812
TU332799 lncRNA upstream 248951 11179931 ~ 11182051 (-) True G280817
TU332800 lncRNA upstream 252086 11183066 ~ 11184143 (-) True G280818
TU332834 lncRNA upstream 328811 11259791 ~ 11259991 (-) True G280841
XM_026923328.2 mRNA downstream 2322 10913634 ~ 10928416 (-) True rab21
XM_026923231.2 mRNA downstream 45302 10830886 ~ 10885436 (-) False ptprr
XM_026923230.2 mRNA downstream 45302 10830886 ~ 10885436 (-) True ptprr
XM_026923233.2 mRNA downstream 76154 10830886 ~ 10854584 (-) False ptprr
XM_026923232.2 mRNA downstream 76154 10830886 ~ 10854584 (-) False ptprr
XM_026922686.2 mRNA upstream 367 10931347 ~ 10940102 (-) True tmem19
XM_034313018.1 mRNA upstream 367 10931347 ~ 10939347 (-) False tmem19
XM_034313394.1 mRNA upstream 10138 10941118 ~ 10974696 (-) False LOC113532419
XM_026923839.2 mRNA upstream 10138 10941118 ~ 10974696 (-) True LOC113532419
XM_034313395.1 mRNA upstream 10138 10941118 ~ 10974324 (-) False LOC113532419
TU332243 other downstream 634617 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1308119 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1722175 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2121400 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2711058 8218561 ~ 8219680 (-) True G278912
XR_004579975.1 other upstream 64125 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 307955 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 655324 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 726910 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1649943 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile