RNA id: TU332792


Basic Information

Item Value
RNA id TU332792
length 495
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G280812
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11169886 ~ 11172446 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACATATTATTTAAAGTCTGTGTGAGgacattgtttacattttcctTTGCAAAGTGTTCATGGGTTTGAGCATAGCCTGCATTTTGAACCTATACTTACCTAATGCAGTTTTGAGGATCATTTTCACAGTCAATATCACAGCGGAATCGTTCCCATGCCAGCCAACCCATGGGTGGGGTCCTCATCAGCCCATTGTCCAGCGCCTGGGCAGCTATGGAGAATGCCAGCAATAAAATAACCACTGTTTGCTGCATGCCTGAAAGAAAGCACCAAATAGAAACCGATACCGACGGAGAAATTCACTGAAATTCCGGTTTCCGGAAACGAGGTTTCTGCAGCCTAGACAGAGTAATAGCTAAGGGTTAAAGTCTGGCGATGCAGCACCTTGTCGTTGCCTTGCTCTCTAAATCAAGCAAGCTGTGGTAAATACTGAGACTCTAAAAAGCAGTTGTGGGAGAACAGTCATGTGGACGGTTTTGTGAGTCATGTGCTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332738 lncRNA downstream 90399 11079168 ~ 11079487 (-) False sobpb
TU332613 lncRNA downstream 238906 10930738 ~ 10930980 (-) True G280652
TU332595 lncRNA downstream 261256 10906173 ~ 10908630 (-) True G280640
TU332558 lncRNA downstream 385593 10783361 ~ 10784293 (-) True G280615
TU332463 lncRNA downstream 391989 10776763 ~ 10777897 (-) True G280527
TU332799 lncRNA upstream 7485 11179931 ~ 11182051 (-) True G280817
TU332800 lncRNA upstream 10620 11183066 ~ 11184143 (-) True G280818
TU332834 lncRNA upstream 87345 11259791 ~ 11259991 (-) True G280841
TU333037 lncRNA upstream 186916 11359362 ~ 11359636 (-) True G281021
TU333091 lncRNA upstream 389279 11561725 ~ 11562064 (-) True G281057
XM_034312991.1 mRNA downstream 75710 11079173 ~ 11094176 (-) False sobpb
XM_026922693.2 mRNA downstream 76068 11079173 ~ 11093818 (-) True sobpb
XM_026923844.2 mRNA downstream 93124 11067737 ~ 11076762 (-) True mapre3b
XM_026923287.2 mRNA downstream 103939 11053196 ~ 11065947 (-) True tmem214
XM_034313320.1 mRNA downstream 119280 11042187 ~ 11050606 (-) True agbl5
XM_026922823.2 mRNA upstream 66790 11239236 ~ 11259412 (-) False vegfab
XM_026922824.2 mRNA upstream 66790 11239236 ~ 11259411 (-) False vegfab
XM_034313377.1 mRNA upstream 156582 11329028 ~ 11344755 (-) True rsph9
XM_026923791.2 mRNA upstream 163622 11336068 ~ 11344755 (-) False rsph9
XM_026923140.2 mRNA upstream 183614 11356060 ~ 11380183 (-) False tmem63a
XR_004579975.1 other downstream 162743 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 873765 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1547267 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1961323 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2360548 8809220 ~ 8809338 (-) True LOC113532431
TU332827 other upstream 66489 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 413858 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 485444 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1408477 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 4001902 15174348 ~ 15177613 (-) False LOC113531972

Expression Profile