RNA id: TU332800


Basic Information

Item Value
RNA id TU332800
length 1049
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G280818
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11183066 ~ 11184143 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGAGTTTATTTTCAAGGTTCGTGAACAAATAACAATGATCTCTGACTCCATTACTCATCATCTGAGTCAAAGCACAAGAATACAAGTATCAGCTCGTTcaaaaaaagcacttttatGTTGTACATAAAGTGAAAGTTTCACAGCATAAATTATAGGCTTCTTTCAAAGGTACACTAAACCCTTAATATGCTGCGACCATGGGCATGTTCCTACCAAAATGTTAAAGTcaacattatatacacataaattaCAACTGCTCAAGGCCCTTATGCCAAACTGCTTTGATCTGTTTGTTCAGTGATCATATGAGCCAAAGCCTACAGTAACAACAGTTTATTCACATCATTTCAAAAAGAATGATTTATTCATGCACTCTAGgactattaataaaaatatcctTGAGTATAATCACTTGCAAAGACATGCCATTATACAGTACCACCAGTAATATGTTTGACAAAAAAAGtaatcttttcttttcattctgacATGccacaaaaaaagcatttttgttGACCTGCCTGAACGGATTTACaaaatctaatatttttatGGATTTTCAATGTCTGAGTCTCGTCATTTCTCATAACTAATCAGAGCAGGGTGTAATTTACAGGAGAAATGCACTGCTAGGTCCTGAGTCTGAGGTCATACATCTCAAGGCTCCAAGACCTCATCTGgcttagaagaaaaaaaaaaacatttttcactggGTAAGTgtatacagacacagacacacactccactgcaaATATTAACTGCATGTCTTGCACTGTATGAGATAATGGGTTATTTAGATAGCCTGACCTACAAATTCAAGGGCATATGCATACACATATgcctacacaaacacatttagtGCAAGAGGTGCAGTGTGACTGGAGTAGCAACTGTGGCTCTGCAGCTGTGCAGGCCTACGTGAGCCTTGGCATGAacacactcctccttcactcctgcggtctctctcttctctatcCCTCCTCTATTAACTCTGTCCATTTCCCACTCTCACTTTGGCTCTGTCTGAATCCTCTCCCTACAGctttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332799 lncRNA downstream 1015 11179931 ~ 11182051 (-) True G280817
TU332792 lncRNA downstream 10620 11169886 ~ 11172446 (-) True G280812
TU332738 lncRNA downstream 103579 11079168 ~ 11079487 (-) False sobpb
TU332613 lncRNA downstream 252086 10930738 ~ 10930980 (-) True G280652
TU332595 lncRNA downstream 274436 10906173 ~ 10908630 (-) True G280640
TU332834 lncRNA upstream 75648 11259791 ~ 11259991 (-) True G280841
TU333037 lncRNA upstream 175219 11359362 ~ 11359636 (-) True G281021
TU333091 lncRNA upstream 377582 11561725 ~ 11562064 (-) True G281057
TU333104 lncRNA upstream 399250 11583393 ~ 11583637 (-) True G281070
TU333109 lncRNA upstream 404860 11589003 ~ 11589687 (-) True G281075
XM_034312991.1 mRNA downstream 88890 11079173 ~ 11094176 (-) False sobpb
XM_026922693.2 mRNA downstream 89248 11079173 ~ 11093818 (-) True sobpb
XM_026923844.2 mRNA downstream 106304 11067737 ~ 11076762 (-) True mapre3b
XM_026923287.2 mRNA downstream 117119 11053196 ~ 11065947 (-) True tmem214
XM_034313320.1 mRNA downstream 132460 11042187 ~ 11050606 (-) True agbl5
XM_026922823.2 mRNA upstream 55093 11239236 ~ 11259412 (-) False vegfab
XM_026922824.2 mRNA upstream 55093 11239236 ~ 11259411 (-) False vegfab
XM_034313377.1 mRNA upstream 144885 11329028 ~ 11344755 (-) True rsph9
XM_026923791.2 mRNA upstream 151925 11336068 ~ 11344755 (-) False rsph9
XM_026923140.2 mRNA upstream 171917 11356060 ~ 11380183 (-) False tmem63a
XR_004579975.1 other downstream 175923 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 886945 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1560447 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1974503 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2373728 8809220 ~ 8809338 (-) True LOC113532431
TU332827 other upstream 54792 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 402161 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 473747 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1396780 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3990205 15174348 ~ 15177613 (-) False LOC113531972

Expression Profile