RNA id: TU333037


Basic Information

Item Value
RNA id TU333037
length 255
lncRNA type intronic
GC content 0.31
exon number 2
gene id G281021
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11359362 ~ 11359636 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAATTTCATtgtaaaatgacaataaagctattctattctattctattctattctattcattaTTTCCATTACCTGGCTACATGAGTTAGTGAGGTAAAACAATAGACAAGTTATTTTAATCCTTTACTATGGCAGTTCAGCCTCTTCTTGCTTTTATCTCACAATGGGAAACGAAACTGTGGATAAGCATCTGGCAGatgatatttcttttatttttatcattacaattttaaagattcctACACAAGTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332834 lncRNA downstream 99371 11259791 ~ 11259991 (-) True G280841
TU332800 lncRNA downstream 175219 11183066 ~ 11184143 (-) True G280818
TU332799 lncRNA downstream 177311 11179931 ~ 11182051 (-) True G280817
TU332792 lncRNA downstream 186916 11169886 ~ 11172446 (-) True G280812
TU332738 lncRNA downstream 279875 11079168 ~ 11079487 (-) False sobpb
TU333091 lncRNA upstream 202089 11561725 ~ 11562064 (-) True G281057
TU333104 lncRNA upstream 223757 11583393 ~ 11583637 (-) True G281070
TU333109 lncRNA upstream 229367 11589003 ~ 11589687 (-) True G281075
TU333143 lncRNA upstream 348054 11707690 ~ 11710984 (-) True G281102
TU333155 lncRNA upstream 380094 11739730 ~ 11752892 (-) False dusp16
XM_034313377.1 mRNA downstream 14607 11329028 ~ 11344755 (-) True rsph9
XM_026923791.2 mRNA downstream 14607 11336068 ~ 11344755 (-) False rsph9
XM_026922823.2 mRNA downstream 99950 11239236 ~ 11259412 (-) False vegfab
XM_026922824.2 mRNA downstream 99951 11239236 ~ 11259411 (-) False vegfab
XM_034312991.1 mRNA downstream 265186 11079173 ~ 11094176 (-) False sobpb
XM_026923788.2 mRNA upstream 66422 11426058 ~ 11441607 (-) True faxca
XM_026923832.2 mRNA upstream 84474 11444110 ~ 11454450 (-) True ccnc
XM_026922681.2 mRNA upstream 102251 11461887 ~ 11469631 (-) True pgm3
XM_034313374.1 mRNA upstream 102251 11461887 ~ 11469324 (-) False pgm3
XM_034313375.1 mRNA upstream 103258 11462894 ~ 11469636 (-) False pgm3
TU332827 other downstream 99970 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 352219 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1063241 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1736743 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 2150799 9207351 ~ 9208563 (-) True G279415
TU333108 other upstream 226668 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 298254 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1221287 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3814712 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5598888 16958524 ~ 16964887 (-) True phf21b

Expression Profile