RNA id: TU333091


Basic Information

Item Value
RNA id TU333091
length 340
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G281057
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11561725 ~ 11562064 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGGCCACAGCATATTACTTACATCATTTTTGTACTCATCAAACCATACAGTGAGCCTGCGTTTCCTGTGgatggggcggagtcatccttaAAGAGgccacgcccatcaggatagaaatgtttcttcaTACATGTAGGATAAAAGTGAttagtcagaataactttgtaccgatttgctctcttgactcccCTTTCTGTAAGTTTTAACATCCCTTTCAATTTTGTTCTGTACTTTTGCCGCCCTCTTCAAAATGTGCTTCGTGGTACATTAAGGTGCCACACTGACACAATTACAGCAATTTCAACATAACTGCATATTAGCAAATCATTTCTGAGGCA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00710 Carbon fixation in photosynthetic organisms

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333037 lncRNA downstream 202089 11359362 ~ 11359636 (-) True G281021
TU332834 lncRNA downstream 301734 11259791 ~ 11259991 (-) True G280841
TU332800 lncRNA downstream 377582 11183066 ~ 11184143 (-) True G280818
TU332799 lncRNA downstream 379674 11179931 ~ 11182051 (-) True G280817
TU332792 lncRNA downstream 389279 11169886 ~ 11172446 (-) True G280812
TU333104 lncRNA upstream 21329 11583393 ~ 11583637 (-) True G281070
TU333109 lncRNA upstream 26939 11589003 ~ 11589687 (-) True G281075
TU333143 lncRNA upstream 145626 11707690 ~ 11710984 (-) True G281102
TU333155 lncRNA upstream 177666 11739730 ~ 11752892 (-) False dusp16
TU333441 lncRNA upstream 471032 12033096 ~ 12036362 (-) True G281362
XM_026923559.2 mRNA downstream 69456 11487504 ~ 11492269 (-) False foxm1
XM_026923557.2 mRNA downstream 69456 11487504 ~ 11492269 (-) False foxm1
XM_026923558.2 mRNA downstream 69705 11487504 ~ 11492020 (-) True foxm1
XM_034313375.1 mRNA downstream 92089 11462894 ~ 11469636 (-) False pgm3
XM_026922681.2 mRNA downstream 92094 11461887 ~ 11469631 (-) True pgm3
XM_026923415.2 mRNA upstream 27749 11589813 ~ 11596577 (-) True ada2b
XM_026923285.2 mRNA upstream 34704 11596768 ~ 11601405 (-) True atp6v1e1b
XM_026923353.2 mRNA upstream 48069 11610133 ~ 11639731 (-) False snap91b
XM_026923355.2 mRNA upstream 48069 11610133 ~ 11639731 (-) False snap91b
XM_034313280.1 mRNA upstream 48069 11610133 ~ 11639731 (-) False snap91b
TU332827 other downstream 302333 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 554582 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1265604 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1939106 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 2353162 9207351 ~ 9208563 (-) True G279415
TU333108 other upstream 24240 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 95826 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1018859 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3612284 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5396460 16958524 ~ 16964887 (-) True phf21b

Expression Profile