RNA id: TU333109


Basic Information

Item Value
RNA id TU333109
length 685
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G281075
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11589003 ~ 11589687 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtgttaaatattttgtattagaAATACAATGACATTTTCgaaatataaaagcaaaatgtaataaaatatatttttgcaggCAACATAAATCaacaaatattgaaaaaaaaaatgcaacactactgcaTTGCTGGCATATTGTGTTTCATAGAAATGCCTTTTGAGAATCATGATTATCATATTGCTCACCCCTACtatcacatactgtatgctcCATGCCTGCTTACTACAGTTCAGCTGATAGGAGCCATGAGGCCCAAAAGTAATTTCAAGGCATTGATCAATATCTCTGTTCTTTATTTTTCGCCTGTGCGAACTAAGAACAGAATTTTAGTGAGACAAATTAATACTACATTGAAAATGTAGCTTGTGAATCAGTTTTAATCGACATTAACATCAAAATGTATAACAAAGAGTACAAATCTGGCCTCCAGTTGATTAACTTTTGTTGAGTCATTGCTTGAGTCCTAGTAAAGTTGCTGCAACTGTGAGTTTTCAGTGGTCTTTCTTAACACCTCAAAACTGAGCCTTCCAATAAATATCAGTCAACTTCCTCTATACAGACAATCCTAATTACATTACAAATACTGACAAGAATGCAGAGCAGTgagcgtttttttttcctgatctgTGAAAACATGTGAtaagtgtataaaataaaatatggattTTGCTTGACAGTAC

Function

GO:

id name namespace
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04664 Fc epsilon RI signaling pathway
ko05150 Staphylococcus aureus infection
ko05152 Tuberculosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333104 lncRNA downstream 5366 11583393 ~ 11583637 (-) True G281070
TU333091 lncRNA downstream 26939 11561725 ~ 11562064 (-) True G281057
TU333037 lncRNA downstream 229367 11359362 ~ 11359636 (-) True G281021
TU332834 lncRNA downstream 329012 11259791 ~ 11259991 (-) True G280841
TU332800 lncRNA downstream 404860 11183066 ~ 11184143 (-) True G280818
TU333143 lncRNA upstream 118003 11707690 ~ 11710984 (-) True G281102
TU333155 lncRNA upstream 150043 11739730 ~ 11752892 (-) False dusp16
TU333441 lncRNA upstream 443409 12033096 ~ 12036362 (-) True G281362
TU333459 lncRNA upstream 504170 12093857 ~ 12094059 (-) True G281373
TU333565 lncRNA upstream 661627 12251314 ~ 12254155 (-) True G281455
XM_026923559.2 mRNA downstream 96734 11487504 ~ 11492269 (-) False foxm1
XM_026923557.2 mRNA downstream 96734 11487504 ~ 11492269 (-) False foxm1
XM_026923558.2 mRNA downstream 96983 11487504 ~ 11492020 (-) True foxm1
XM_034313375.1 mRNA downstream 119367 11462894 ~ 11469636 (-) False pgm3
XM_026922681.2 mRNA downstream 119372 11461887 ~ 11469631 (-) True pgm3
XM_026923415.2 mRNA upstream 126 11589813 ~ 11596577 (-) True ada2b
XM_026923285.2 mRNA upstream 7081 11596768 ~ 11601405 (-) True atp6v1e1b
XM_026923353.2 mRNA upstream 20446 11610133 ~ 11639731 (-) False snap91b
XM_026923355.2 mRNA upstream 20446 11610133 ~ 11639731 (-) False snap91b
XM_034313280.1 mRNA upstream 20446 11610133 ~ 11639731 (-) False snap91b
TU333108 other downstream 979 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 329611 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 581860 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1292882 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1966384 9622533 ~ 9622619 (-) True trnay-gua_2
TU333129 other upstream 68203 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 991236 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3584661 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5368837 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 5513878 17103565 ~ 17103637 (-) True trnar-ccg_5

Expression Profile