RNA id: TU333143


Basic Information

Item Value
RNA id TU333143
length 3053
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G281102
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11707690 ~ 11710984 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTAAAACTTcactcatttttattaaaaaaaatcaacatttcatTTGTTACAACAGcttatagtagttactgaatggGCTGTACATGTCCATTTTATacaatgtttacatgtaaaGCGATCAATGTACAAAATAGTCGAGTTAGTGGAATAACGAAATACATGACTCATTACTAACCAAATGTTGGTCACCTTGGAATATATCCTTGCAAAGCACCATggtattaaaaaatgaaacgaATGATAACGAGAAAATAGTCTTACATCAACAGGCCCCACTGTCCTTCACTCTCCATCTCAACTTTCTGCTATGATTCTACATGCAGGAGCCAAAGTGCTTAATGTTTTACCCCTCCATGGCAGCATGAGGCGGCTAGCTCTTTGACCATTTCAATATGACACAGACCTTTAAAAACATCTCCCTCCATCTTAGATTCCAAACTTCAACATCTCTCTGACTTATTTTCAGACATCACAAGCTCTGCTGGccagagaaaaaaatcttttgctTCAAAACCTATGAATTCAGGTAAGGCCTGATCCTGATTTCATACCTTTGGTAGCCCCTtaatgtttgatttaaaaaaaaaagatacattgCTACAACCATGAAAACTACGATGGCACCTAATAAAATGTTGATTCTTTGAGAACTTTGTCACACATTCACGCAGGTTTCAGACTTGCTCGTTGTCGTACCAGTAACTAAGCCGAGGTACCCTAAAGTGCAGTAGGAGTCTGAGAATATTGCCTGACAGCAATGCTGGTTTGACTGGATGGTAATCAAATGACGGATACACCAAGAAGGGAAATTACCCAATTGCCCTTGGAGTAGGGCGAGACCACCAGGGCTTAACAGGAcaaatttttaaagaatgtaaacGGATATGTATCTGATTGTACCGCATGATAACATTTCAGATTCATCACAGTGAAGATGCAGTGGATTCTGGGCACAGGAAAAAGGCAGCAGCGTGACTAGAACTGTACAGAGTTAAATATAAAAGCCaaatgaatgagaaaagaagtCAGATTACCTGCCATCGCAGGCAGCGAGTATTTTGGACAGGGCAGCTAGACCACCTCAATGCTGCATGCTATATTAAACAGAACTGCTGAGAAGAGCAGATGCAACATGTTGATTGTCTACATAACAACCTGTACATGTGTAATGCTTCTTGTGTGCAGTCTCTCCAAAATAGTAAACTATTTGTGCTGATGTCCCTTATTTGAAAAAGTAACAGATAAAACCATTAACCACACTCACTTTTTCATGATGGTATGAAGAGTGATGAAAAGCAACATGGGCCAAATAATAATGCTTAAAAAGttctcattcagccacaaaatgAAGATTTTTTAAGAAGACACATAGGTTTTTATGTATTAAGAGCATCAGAGCTGATCCATCGACATTTCTCTGTCCTTAAgcgtgaaaaagaaaaaaaaaaactttgcactAACACTCCATGACTATGCCAGGACTGTGTGCTTAACAACACACTTAATGGGCATAAAATAATACCAGGGTATCTGTAAAACTGGACTTTTCACACTAACGGGACAGACACTCGTGAATCGACGTTCTTTGCCTTCTGATGTTCAGCATGGATTGTCGTTGTACTTTCActgtcatacatttttatagaaaaatagaacAAAGCATATATTGAAAGCATACTGGTAAAGCACTGCAAGGATATCATGGAGAGATTTacaagttttcttccttttataGCTTATAAATATGGTATCTATACAATATGtggtacaaaaatattttgacattttatggGCACTGGtagtctaaaaaaaacaaaaagagagagctgcaaaatgattaaaaagagCTTTCTAAAAAACTGCTCAGGCACGATAAACTTGTCCTTGATTGTATACTGAATGTTTgtgatgaatattttaatatataattccCAGAAGGAATAAACAGTGCTGATGGCTGGTGAGGAGATGGCAGGGAGAAAGGACAGAGTATGAGAGACGTGCTCTGAGTTGTGACCTTCTGCTAGGGACTTCTCTGCAGTTGCAGTCAGGTATGAGAGGAggatgaaaacaaaacaaacaaacaaaaaattaatttgaggCAAAAGTGAAGATTTTGGTTATTTGCTCAAGACCATAGAGTGGTGTTTCCTCATCTGTCCTGGAGCTCACTTTTAGAGCCACTGGAGCCAAAAGGAAGCTGTTGCTTCATCCTGATGACTAAATCAGCAGCACCACACATCTGTCTGACCATCTGTCATTCTCTTATTGCTAAATTTCTGTTAGCTTTTCACTTTCCAGTAGAACCGCGTTGTGCTTTACAAAAATTCAATGCAACAACGAGGTGGAAAAGATCACCAGAAGCAACACGTTCTTGTTTTAGCTTGTAGGAGAGCTCTAGGTGGACTGGCTGATCAGAAGATCTAGTGGTTGAGCTTCAGACAAAATGGCCCCACTGAACAGAACTGACCAGTGTAATGCCAGTGAGAGCCACAGGGAGGCTCCATTCTCCTTCTCCGTCCATTCTCtccaccttgtttttttttttttttttttttttttacaagtatcCGCCACCTCTACACGTCAAAGTGTCTTTTTCCCTAAAAACTGTTTCTTGTTCTTTACAGAACAACATACACATCACTCActcttctttattttaaaaaagtcattctATGCACAAATGCTATTTACACTGATCGAGATGgcggggtgggggtggggttagGGACGTGATTGGTGGGGCTCAGGACGAGTCGGTGCAGGGTGAGGGAGGCGGAGGGTAAAGGTGCTGCGAGTAGCTGCGTTCTGTGTACGGTGAGGGCGGGCAGCTTTCGCAGTTCTCCTCAGCCGACAGGTACTGGCTGCGAGGCGTGGGTGGTGGTGGGAACGGCTCAGAGTCGTAGTTGGCGTCACTTGCATAGCCCTTGGCCATGACGATGGAGGAGACGGGCCGTGCTCTGCGGCCTGGCGTGTAGTCGCTGTCACATACGTCTGTGCTGCACGGCGTGGTTGGAGGAGCAAAGTGCCGGTAGCTGTATGGTCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333109 lncRNA downstream 118003 11589003 ~ 11589687 (-) True G281075
TU333104 lncRNA downstream 124053 11583393 ~ 11583637 (-) True G281070
TU333091 lncRNA downstream 145626 11561725 ~ 11562064 (-) True G281057
TU333037 lncRNA downstream 348054 11359362 ~ 11359636 (-) True G281021
TU332834 lncRNA downstream 447699 11259791 ~ 11259991 (-) True G280841
TU333155 lncRNA upstream 28746 11739730 ~ 11752892 (-) False dusp16
TU333441 lncRNA upstream 322112 12033096 ~ 12036362 (-) True G281362
TU333459 lncRNA upstream 382873 12093857 ~ 12094059 (-) True G281373
TU333565 lncRNA upstream 540330 12251314 ~ 12254155 (-) True G281455
TU333597 lncRNA upstream 657975 12368959 ~ 12369265 (-) True G281486
XM_026923353.2 mRNA downstream 67959 11610133 ~ 11639731 (-) False snap91b
XM_026923355.2 mRNA downstream 67959 11610133 ~ 11639731 (-) False snap91b
XM_034313280.1 mRNA downstream 67959 11610133 ~ 11639731 (-) False snap91b
XM_026923354.2 mRNA downstream 67959 11610133 ~ 11639731 (-) False snap91b
XM_026923352.2 mRNA downstream 67959 11610133 ~ 11639731 (-) True snap91b
XM_026922860.2 mRNA upstream 10079 11721063 ~ 11752913 (-) True dusp16
XM_026922859.2 mRNA upstream 12872 11723856 ~ 11747201 (-) False dusp16
XM_026923546.2 mRNA upstream 49797 11760781 ~ 11768919 (-) False gpr19
XM_026923545.2 mRNA upstream 49797 11760781 ~ 11768918 (-) True gpr19
XM_034313339.1 mRNA upstream 49797 11760781 ~ 11766409 (-) False gpr19
TU333129 other downstream 47363 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 119666 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 448298 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 700547 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1411569 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 869939 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3463364 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5247540 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 5392581 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 6267801 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile