RNA id: XM_026922859.2


Basic Information

Item Value
RNA id XM_026922859.2
length 2630
RNA type mRNA
GC content 0.53
exon number 7
gene id dusp16
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11721063 ~ 11752913 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAGTGGGCTTCCAGGGGACAGGCAGTGCAGGGCTGCTCGCTGAAACTCCACCACCTCTCTGTCCATCTCGGAGCTGAATGTCCTAATAACCACTTGAGCATGAAGACGAGAAGCGAGGAGATGATGTAATGGCACTGTGGCCCAGGAGAAAAGCCCTCTTTTGTGTTGTCCGTGCAATGGTGTGAAAAAAGCCACCCTCCTCTTTTCCTTCCCCGGCAAACCCCCAAAAACACAGCCGAGTCTGCTGGAATTGGGCCGAAGTGATCTTACTGCTTGGCAAACACACACCCCATTACCACATCCATACTCTCtcagacatgcacacatacacatagtgCACAGAGTggacagtctgttttttttttattctgttgttAGTACATAAAGAAGACCtgctctctttccctccctcccatttttccctcctctttttctttctatttcttgctttcactttttcactcgttcgtttttttttttttcaaactcacCAGCCAAACACTAAAAGAGTGACATCATCGGCAGCCACCACAATGGGGTCGTTCTTCTACTGAAGGCCCTTGCGGGCCACGTCATCGCACCACAGGAAGAGAGGAGGTAACAgtcagacagatggatagagaggTCATGGATATGGTAGAGCATGATGGGACAGGAGCTCTGGCCTCAGTCAGACTCATTGGGCCAGAAGGCCTCGTGGCCCTGCTGGAGGGTGGACTGGACCGAGTGCTTCTGATTGACAGCAGGCCCTTCGTGGATTATAACACCTCCCACATCCTAGAGGCGGTCAATGTGAACTGCTCCAAGCTGATGAAGAGGAGGCTGCAGCAGGACAAGGTGCAGATCGCCGAGCTTCTGCAGCATTCTGCCAAGAAGAAGTTGGAACTGCAGAATCAGGAAGTGGTGGTCTATGACCAGAGCTCGTCTGACCCCTCCTCCCTGTCATCAGAGGCCTTCCTCAGCGTCCTATTGGCCAAACTCGAGAGGAGTTTCCCGTCTGTCCACCTGCTCTCAGGTGGGTTTGTGGAGTTCTCTAATCTCTTCCCTGGTCTGTGTGAGGGaaagtgcatgctggtgccctCCTGTATCTCACAGCCATGTCTTCCCCTCAACAGCAGCGGCCCTACACGCATCCTGCCTCATCTCTATCTGGGCTGTCAGAGAGACGTGCTCAACATGGATTTGATGCAGCAGAACGACATAGCGTATGTCCTCAATGCCAGTAACACATGTCCCAAACCTGACTTCATTCCCGAGTCGCACTTCCTGCGTGTACCTGTCAATGACAGCTTTTGTGAGAAGATCCTGCCATGGCTGGACAAATCTGTGGAGTTCATAGAAAAGGCAAAAGCTTGTAATGCCAGAGTTCTAGTCCATTGCCTGGCAGGAATTTCCCGATCAGCTACCATCGCCATTGCCTACATCATGAAAAGAATGGACATGTCCTTAGACGAGGCATACAGGTTTGTGAAGGAGAAGAGGCCGACCATCTCGCCCAACTTTAACTTCCTGGGCCAACTGCTGGATTTTGAGAAGAAAATCAAGAGCCCTAGTGATGTGGCAGCTAAGGGTAAGCCAGTGCAGGCAGAACTGGCCGACAAGCCAAGCCCTGGGCAAGAGAATGAGTGTTGTGCCCCATGCTCGGCCAGCGGGGTCGGGGTGGAGAGATCTGCCCTGGCACCACTAGAGCCTCTGACACTGCCCTGTGTACTGGCTGGGGTTCCTGAGGAGCAGCTTCTGGCTGAGGCACTGTGCAGCCTGCAGCTGAGTGAAGAAATGGAGGACAGCATGCGCTTGAAGCGCTCCTTCTCCCTGGACATAAAGTCATATGGAGAGCCAAGCGTTGGAGCTCCTTTACGCACATTTGGCAGTGGAGATAGTCCAGACTACTACAAACCATCCTCATTTAAAGATCCATCAGTTAAGCCTTGCCAGTTCTCCCCTGTGGAGGAGGTTTCAGAGCAGTCCACTCCTGAACAGAGTCCGGACAAGGAGCAAGCCGAAGGTCCCACAACCAGCAGCAACAAGTCCATCAACTCTGCCAAATCCAGTCACTCCAGCAACCCCAACCAATCCAATAAGCCCCAGTCTGCAGCATTAAagcctcctcctccacctgccTGCCCCCAGCCACTGCAGAGGAGTGGTAGTATGGAGGAAACTGCAAGTGCTGCCAGCTTTCTGCTTGGCCTGTCACGCTCGCAGCAGCAGTTGGCCAAAACTGGGTTAGGCGCACTAAAAGGCTGGCACTCCGACATCCTTCTGGCACCTGTCACCGGTGGCTGGTACCTCTCATCTGAGTCAGCACGGTTCTACTCAACCTCAGCCATTTTCAGCAGTGGAGGCAGTGGAGGAGCTGGAGGTGCGCAAAGCAGTTTCACGGCGACATACAGCTGCAGTCAAGGGTTGGAGGCAGTGAGGAGGCGGAGCAGACAGAGGAGCAGCGAACGCGGAGACTCGCGCCGTAGCTGGCATGAAGAGAGCAGCTTCGAGAAGCAACTGAAGCGGCGTAGCTGCCAGATGGAATTCGGTGATGGCATGACCGAGAGCCACTCCAGAGAGGACCTAGGGAAAGTAGGCAGCCAATCCAGCTTTTCTGGGAGCATGGAGGTCATTGAGGTgtcctga

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333143 lncRNA downstream 12872 11707690 ~ 11710984 (-) True G281102
TU333109 lncRNA downstream 134169 11589003 ~ 11589687 (-) True G281075
TU333104 lncRNA downstream 140219 11583393 ~ 11583637 (-) True G281070
TU333091 lncRNA downstream 161792 11561725 ~ 11562064 (-) True G281057
TU333037 lncRNA downstream 364220 11359362 ~ 11359636 (-) True G281021
TU333441 lncRNA upstream 285895 12033096 ~ 12036362 (-) True G281362
TU333459 lncRNA upstream 346656 12093857 ~ 12094059 (-) True G281373
TU333565 lncRNA upstream 504113 12251314 ~ 12254155 (-) True G281455
TU333597 lncRNA upstream 621758 12368959 ~ 12369265 (-) True G281486
TU333624 lncRNA upstream 710362 12457563 ~ 12459092 (-) True G281510
XM_026923353.2 mRNA downstream 84125 11610133 ~ 11639731 (-) False snap91b
XM_026923546.2 mRNA upstream 13580 11760781 ~ 11768919 (-) False gpr19
XM_026923545.2 mRNA upstream 13580 11760781 ~ 11768918 (-) True gpr19
XM_034313339.1 mRNA upstream 13580 11760781 ~ 11766409 (-) False gpr19
XM_026923205.2 mRNA upstream 26690 11773891 ~ 11795925 (-) False tbk1
XM_026923206.2 mRNA upstream 26690 11773891 ~ 11795414 (-) True tbk1
TU333129 other downstream 63529 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 135832 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 464464 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 716713 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1427735 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 833722 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3427147 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5211323 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 5356364 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 6231584 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile