RNA id: TU333441


Basic Information

Item Value
RNA id TU333441
length 3241
lncRNA type intronic
GC content 0.40
exon number 2
gene id G281362
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12033096 ~ 12036362 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGCCTTCATCTGCTTGACTGTGTAGCGCATGGTGCCAAACGGGCCATCCTTCAGCAACTTCTTCCCCACCACTTTGGCTCGGATCACTGCAAACAAAATCACATAAGCACATGTCCTGGTTATTATCCCGCAGACATCTTGAGTCACAAGCACAAAAAGCAGGGCTGAAGCTCAGCAGCTAGTTATCAACTAACAGCAGTGATAAACAGGTTTAGATATATTTTTCCCTACCAGCTTAGATCAGAGGTTTAATGGTAGAAGAGACTCAGACTTCCATAACTTCATGGAAGCTAATATATAGACAGGACTAACTCTTAGTAGAAGCACTCTTAGTAGTCTTGACATGAGCACAGGTTTGTCTCTGCTCACACAGTAAGCacatattttataatcataaaTGTCTTCTATGGGACACAGAAGGCTGTTACACAGGTGTAACAAAAAACTATTAAACACAGGGCATAAAAAGCATCCGCAGTACTGTATTTAATCATTATATGGCAAAACAATGATCTCCAGCAGCCCGAACTGAGACACAGAGCGATTGTGATATTGCAATAACTGTCTAAAATGTATGATAAGAAAGTACTGTACGAGATCTTTAATGATTAACTTATGTGATTAGATCTTGCTGCACCATGCATAAAGCAAACACGTCACATGTAAAAGTGCACTGTGTTGGATAAGTTAGGATGGGAATAGTATGTGTTAAGTGTTAAAACTGTGCAGTAACTTAAAAGCAGTTTTTATGAGATCATGTGTaatttcttcatattttgaATCATCAAACTGGGACATATTGAGTAGGTGTCTCTCACGCTGTCTCTCTAAAACAGAACTGGCTCCTTGGAGAGCAAAGAATGAGGGCATCAATACTCCGCCATCTTGCTCTCTAATCCTGCCCTGTGCGAAAGGATTAAACAAACCAATGCAGCCGTCTCAACAGCCTCAAGTCTGTACAGTGATCTGATTTATTTGCCTTATCAGACTGGACCCatataaacaacagcaaaacaggGAGCGTAGACAAAACATCTGGCTTGGTTTACGTCTTTCCTGACTGTTCAAAATGCCTGACGCCATTTGTACAGGAGGCAGCTAACGTGATGGCTCATTTATAAAGATGAATAGGCCTTTCCTGTAGTGTCTGATTCTGCTTTCTCAGAGGAATATCAGCTCTTAAACACCAGGCAGCGTGTGAAGTTCACCTGCTTCTCTCAgccagacagagaggaagaaaaaaagggaggAGGTGACAGAGAAAGCTTGCAGTGACGGGGATGTTTGTTATCTTTTCTTCCCCGTAGGAATTTCCTTCCCAGATTTCCTTAAGGCTTGCATTCCACAGGCTAATCCAAAAAAGAAAGCAGTCTGACTCCTCCTGCCCAGCAGGGACAGAAGGTTCTAGCATCTTCTCCACTATCACTGCCCATCTAAGCTAACCAAGTAGGATAGACAAGGGGAAGGAAATAAAGTCACCCAAAGCCAGCTCATTGATGGGATAAAACAAGCATGATACTGGCTTTGTCTTCCATTGGTTTACATATGGAGACACTTCATTGGAAATAGAGTGTTCCTACAATCCAGtaacaatattttaaatctaatcaaaactatctaaattacattttatgtcCAGTTGCCTGTAGTGAGCTACCAcatattagcatatttttttgctgtgtagGCCCATAACAGGATAAACCTTCAGAACCCCCTTTGCTTGTAGCCCAGGCTACATTAAATGCTGTTTAGAGGGCCCTGTAAGTAAAACAGCAGACCTGCTCATTAGATAGGGCAATACGAGTCTGCTCAATGTAACAGCCACACCAACACGAACACTGGGCTTTGACCTACCGGGGACCAAGAATCTCTTACTACTGTTTGTCTAGACATCTCTCTACATCTAACTATGTCTGCATGTGTTCCTTTACAACCTATATacgtatacatatatatacaaaacaGGTATATACTTCCCGATATACTTGCATGTCAATATGTACATATCTGGCTTACATTTGAAACAGTAGGTGTCATTTTGCAGTGAGAAATGCACCtgggtaataaaaaaaaaagaatattgcaaatagaaaattagatttttatacTAATCGTGTTAGAATAATGTGGCTACACATTATTATAGTAAACCAAAATGTAAAGTATGGTACAAAAACTTCTATGAATGCAAATTTTAGTACACGTGTACAAGAACTCACGAGGATTGCTGGATTTTACAGATAGAGTTTTGCAGAGGCTGAACATTCCATGTACGATTAGTCAAATTTTTAAGAAAAGCACTCCTAATGACCATTAATGAGATTTAGAGGATTGCTTACCCAAATTAGTTCCTTGTCATTATAAACAGCTCAGCTGCATTTCAGCTGAAATGGGTAATTGATTGTTTGcagcactgaaatcatttttttcaaattaaaaaaacaaggagGACATGGAGGAGACCTTTTTAGTTTCAGGCTGAATCTTGTATCTTGACCTTTTACCTTGTATTTGAATAGACTGTGGGTTCCCTAACCTTTAAATGTTCCACTCTTCACTTGGCTTTAACCCAAACCTACATGATTGTCCTTGCCAGAGATGCTCCATATTTGGTACATTCCGGTCTGAACCACATCACTGCACTCAAAGCCCCTCTCTCCAGCACCTTGGCTGGGATTCTTTAACATGAATTAAATCACAAAGACCAAAGTGTAGGGCAAAACACTAATCTGGTGCATGGTAGGTCTTAAAAGAAGAATCTCACATTGAGTAGACTATTTCAGTCGcacaaaatctctctctctctctctctctctctctcctgtggtTTTATGCCCTAGCGTTTCTGGATAGGACTGGATGCATGGGATGACATTAATGATCCATCTCCATGCTGTTGATTACAGAGAGCTGTGTGCCTAAATGCAGGTATCGTATGAGTTCAGTTCTGTGAGGCACTGAACAGTCTCACTGTAGGTCAAACATTCAGGCTTGAGAATATCTCAGTGCGATATTTAaccgtttttttccccctttcagCACTGGAGATGCACTATGAAAGTCAGTGAAGATTTAGTACTATTTCGTTCTCAAAACAGATGTTTGAGTGAGGTTATTTTTGAAAAGAAATATGTTTACACATGCAAAGGGAATGTGTGCTCTGTTTCTACCATTGGAGCATTTgccaaaagattttttaaaaagcacctTATGAATGTATAAACTTTGCCTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333155 lncRNA downstream 280204 11739730 ~ 11752892 (-) False dusp16
TU333143 lncRNA downstream 322112 11707690 ~ 11710984 (-) True G281102
TU333109 lncRNA downstream 443409 11589003 ~ 11589687 (-) True G281075
TU333104 lncRNA downstream 449459 11583393 ~ 11583637 (-) True G281070
TU333091 lncRNA downstream 471032 11561725 ~ 11562064 (-) True G281057
TU333459 lncRNA upstream 57495 12093857 ~ 12094059 (-) True G281373
TU333565 lncRNA upstream 214952 12251314 ~ 12254155 (-) True G281455
TU333597 lncRNA upstream 332597 12368959 ~ 12369265 (-) True G281486
TU333624 lncRNA upstream 421201 12457563 ~ 12459092 (-) True G281510
TU333645 lncRNA upstream 439902 12476264 ~ 12477629 (-) True G281527
XM_026923422.2 mRNA downstream 107589 11865792 ~ 11925507 (-) False ptpro
XM_026923424.2 mRNA downstream 107590 11865792 ~ 11925506 (-) False ptpro
XM_026923423.2 mRNA downstream 107590 11865792 ~ 11925506 (-) False ptpro
XM_026923421.2 mRNA downstream 107590 11865792 ~ 11925506 (-) True ptpro
XM_026923205.2 mRNA downstream 237171 11773891 ~ 11795925 (-) False tbk1
XM_026923692.2 mRNA upstream 46764 12083126 ~ 12093099 (-) True LOC113532343
XM_026923739.2 mRNA upstream 61159 12097521 ~ 12108662 (-) False LOC113532368
XM_026923738.2 mRNA upstream 61159 12097521 ~ 12108662 (-) True LOC113532368
XM_034313357.1 mRNA upstream 73881 12110243 ~ 12122771 (-) True LOC113532307
XM_026922648.2 mRNA upstream 217893 12254255 ~ 12272627 (-) True zgc:165507
TU333129 other downstream 372769 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 445072 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 773704 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 1025953 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1736975 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 544561 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3137986 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 4922162 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 5067203 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 5942423 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile