RNA id: TU333624


Basic Information

Item Value
RNA id TU333624
length 1362
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G281510
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12457563 ~ 12459092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcaaaatgagcagaaaaatATCCTATTGCAAAATACTTAaaatttgatgttgcaatacaGCAAAAGAGAAGTGATCATTgagggtgaatactttctgaaggCACAGTATATTTCTGCACATATTTCCAAATCTCACGGGTGTATTTTAATTGCCCATTGTTTATGCTGTATTTAAGTGCTAAATGAGTCGGAATTCTGGCGCTGTAGCTCAATAAGACAGCTTTGAATAATGTGTAGACTTTCAGACTTGAATCTGGTACACCGCATACATACAGCGGTGCAGAAATGATGCTCACTTAACATCGATCACATGTTAGACATCGTCAATATCTGATTACATCACCCAACCCAGCttcaaaatgattaaaactcTCTTCACAGCAGTCAGGGAGATAATAAATAGATGTCTCTAATGCAAACCATGCAAAAAAATTCAGCTAGGAGTAACTTCCTTCTCCTCAGTATGTATTCTCTGGTGTACTTTTAAGTACCATGATCTGTAAAAGCTTTTGCCGCACTGCTCACACTGATAAGGCTTCTCTCCAGTGTGCTTTCTTTGGTGAATCTTTAAAGACCCTGGATGAGAAAAGCATTTGTCGCATTCTGAACACCGGTAAGGCTTCTCTCCGGTATGTATCCTCTGGTGAACTTTTAACGCACTTGActgagtaaaactcttcccacactgtgtgCAATGGTACGGCTTCTCCCCAGTGTGTATCCTCTCATGACCCTTCAATAAGCCTGCATGAGAGAAACCCTTTCCACACTGAGAGCACTGGTATGGCCTCTCTCCAGTATGTATTCGAACGTGAATTTTCAGCGATGTAAGATGGGAAAAATTCTTCCCGCATTGAGTGCAGTGGTAAGGCTTCTCGCCACTATGTATCCTCTCATGAACTTTTAGTGAACTCGGGTGAGAAAACTGCCTTCCACATTCAGAACAGCTGTAAGGCTTCCCTCCGTGTGTGATCCTTCGTGATCTTTTAGGGAGCTCGGATGTGAAAATCTTTTCCCACACTGAAGGCAACAGAAGGGCTTCTCTCCAGAATGCATGcgctgatgtttttttaaaaatgcatgtctAGAAAAGCTCTTCCCACACTGAAGGCACTGGTACGGCTTCTCTCCCGTATGTACTCTTAGGTGGGTTTTTAAAAACTGCATCTTAGCAAAAGTCTTCTCACATTGAGGACAGTGGTACAAATTATTGTTGGTGGTTTTGTCTTTGTTGCTTGCCTCTGTTAAAACAAGGACCCTCTGAAAGCTTCGATTTGTGGTTTCTTCATTATACTCTGTGTTTTTGGGTGTTTCCTCTGACACCTTTTgctcttcatcttcctccttCAGCTGCACAGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333597 lncRNA downstream 88298 12368959 ~ 12369265 (-) True G281486
TU333565 lncRNA downstream 203408 12251314 ~ 12254155 (-) True G281455
TU333459 lncRNA downstream 363504 12093857 ~ 12094059 (-) True G281373
TU333441 lncRNA downstream 421201 12033096 ~ 12036362 (-) True G281362
TU333155 lncRNA downstream 704671 11739730 ~ 11752892 (-) False dusp16
TU333645 lncRNA upstream 17172 12476264 ~ 12477629 (-) True G281527
XR_003403338.2 lncRNA upstream 687190 13146282 ~ 13147358 (-) True LOC113532391
TU334183 lncRNA upstream 709583 13168675 ~ 13210493 (-) True G281964
TU334201 lncRNA upstream 800060 13259152 ~ 13285718 (-) True G281981
TU334236 lncRNA upstream 861081 13320173 ~ 13373048 (-) False G282006
XM_026923619.2 mRNA downstream 5978 12445898 ~ 12451585 (-) True si:ch211-214j24.10
XM_026923617.2 mRNA downstream 22372 12430448 ~ 12435191 (-) True apex1
XM_026923527.2 mRNA downstream 42489 12411859 ~ 12415074 (-) True LOC113532240
XM_026922708.2 mRNA downstream 48033 12402179 ~ 12409530 (-) True LOC113531803
XM_034313232.1 mRNA downstream 63042 12375791 ~ 12394521 (-) False mapk11
XM_026923776.2 mRNA upstream 29303 12488395 ~ 12517676 (-) True shisal1a
XM_026923775.2 mRNA upstream 36947 12496039 ~ 12517683 (-) False shisal1a
XM_026923777.2 mRNA upstream 36947 12496039 ~ 12517676 (-) False shisal1a
XM_026923774.2 mRNA upstream 36947 12496039 ~ 12517676 (-) False shisal1a
XM_026923288.2 mRNA upstream 110976 12570068 ~ 12579954 (-) True cmasa
TU333129 other downstream 797236 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 869539 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 1198171 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 1450420 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 2161442 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 121831 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 2715256 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 4499432 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 4644473 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 5519693 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile