RNA id: TU334183


Basic Information

Item Value
RNA id TU334183
length 504
lncRNA type sense_over
GC content 0.52
exon number 2
gene id G281964
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13168675 ~ 13210493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agAAAATGCGCAGTTCAGGATACTGGAATCACGGCCTTCTGTAACAGCAATCGAAAACTACTCTCATGGATAGACTTTTGCATGGCATATGTGTGATACCTGTATAGGTCAATGCCAGTCTGGTTCTTGGTCCACGTCTGGCCCTGGCGCAGCACTTCCTCCACGATGTCTTTATCGCTTGGCATCCTGTACACAGGAAAGATGTAGAGCCAGCAGAGCACGAGCACACACACGGCGGCCCACACCGACTTACTCCTGTGGAATCGCAAACACACCATCATGCCGCCTGCCATGAAGAGACCCAGAGATTCCACACGCACAGCCTGCGCTCCTTTTCACTCACGTCCCCTCGCCATTACGACTGATAAACGGGTCTGGCTGCAAAAAATGTTGCATCGTCCTGCTCGGGCTACAGTCCTTTCACGCGCAGCCTGCATCAGACATCCAGTGTTTCATTGTTTGGTGCTTTGCGTCTCTctctctctctctctctctctctctctt

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403338.2 lncRNA downstream 21317 13146282 ~ 13147358 (-) True LOC113532391
TU333645 lncRNA downstream 691046 12476264 ~ 12477629 (-) True G281527
TU333624 lncRNA downstream 709583 12457563 ~ 12459092 (-) True G281510
TU333597 lncRNA downstream 799410 12368959 ~ 12369265 (-) True G281486
TU333565 lncRNA downstream 914520 12251314 ~ 12254155 (-) True G281455
TU334201 lncRNA upstream 48659 13259152 ~ 13285718 (-) True G281981
TU334236 lncRNA upstream 109680 13320173 ~ 13373048 (-) False G282006
TU334237 lncRNA upstream 109680 13320173 ~ 13321414 (-) True G282006
TU334285 lncRNA upstream 197120 13407613 ~ 13409326 (-) True G282047
TU334298 lncRNA upstream 217164 13427657 ~ 13427872 (-) True G282060
XM_026922677.2 mRNA downstream 58461 12962716 ~ 13110214 (-) True LOC113531778
XM_034313323.1 mRNA downstream 348969 12809321 ~ 12819706 (-) True prl2
XM_034313228.1 mRNA downstream 365253 12787882 ~ 12803422 (-) True nuak1a
XM_034313190.1 mRNA upstream 66433 13276926 ~ 13304279 (-) False scyl2
XM_026923049.2 mRNA upstream 66433 13276926 ~ 13302507 (-) True scyl2
XM_026923050.2 mRNA upstream 66433 13276926 ~ 13302505 (-) False scyl2
XM_026923473.2 mRNA upstream 93961 13304454 ~ 13310263 (-) True depdc4
XM_026922690.2 mRNA upstream 114908 13325401 ~ 13338373 (-) True metap2a
XR_003403346.2 other downstream 587612 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 1508348 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 1580651 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 1909283 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 2161532 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 1963855 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 3748031 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 3893072 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 4768292 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 4768292 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile