Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579994.1 |
| length | 691 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 3 |
| gene id | LOC117599591 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 13571800 ~ 13575375 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU334376 | lncRNA | downstream | 7854 | 13559259 ~ 13563946 (-) | True | G282116 |
| TU334298 | lncRNA | downstream | 143928 | 13427657 ~ 13427872 (-) | True | G282060 |
| TU334285 | lncRNA | downstream | 162474 | 13407613 ~ 13409326 (-) | True | G282047 |
| TU334236 | lncRNA | downstream | 198752 | 13320173 ~ 13373048 (-) | False | G282006 |
| TU334237 | lncRNA | downstream | 250386 | 13320173 ~ 13321414 (-) | True | G282006 |
| TU334559 | lncRNA | upstream | 259561 | 13833248 ~ 13837431 (-) | True | G282279 |
| TU334567 | lncRNA | upstream | 264971 | 13838658 ~ 13840594 (-) | True | G282283 |
| TU334636 | lncRNA | upstream | 363969 | 13937656 ~ 13937879 (-) | True | G282349 |
| TU334657 | lncRNA | upstream | 380312 | 13953999 ~ 13969897 (-) | False | G282368 |
| TU334658 | lncRNA | upstream | 394836 | 13968523 ~ 13969897 (-) | True | G282368 |
| XM_026923211.2 | mRNA | downstream | 22297 | 13532919 ~ 13549503 (-) | False | LOC113532074 |
| XM_026923212.2 | mRNA | downstream | 22297 | 13532919 ~ 13549503 (-) | False | LOC113532074 |
| XM_026923210.2 | mRNA | downstream | 22297 | 13532919 ~ 13549503 (-) | True | LOC113532074 |
| XM_026923213.2 | mRNA | downstream | 22732 | 13532919 ~ 13549068 (-) | False | LOC113532074 |
| XM_026923215.2 | mRNA | downstream | 22733 | 13532919 ~ 13549067 (-) | False | LOC113532074 |
| XM_026923669.2 | mRNA | upstream | 47610 | 13621297 ~ 13648197 (-) | True | prkcq |
| XM_026923135.2 | mRNA | upstream | 91636 | 13665323 ~ 13724630 (-) | False | sfmbt2 |
| XM_026923134.2 | mRNA | upstream | 91636 | 13665323 ~ 13724630 (-) | True | sfmbt2 |
| XM_034313246.1 | mRNA | upstream | 91636 | 13665323 ~ 13724629 (-) | False | sfmbt2 |
| XM_034313141.1 | mRNA | upstream | 177836 | 13751523 ~ 13763790 (-) | True | LOC117599536 |
| XR_003403346.2 | other | downstream | 990737 | 12580923 ~ 12581063 (-) | True | LOC113532438 |
| TU333129 | other | downstream | 1911473 | 11657890 ~ 11660327 (-) | True | G281092 |
| TU333108 | other | downstream | 1983776 | 11586304 ~ 11588024 (-) | True | G281074 |
| TU332827 | other | downstream | 2312408 | 11238935 ~ 11259392 (-) | True | vegfab |
| XR_004579975.1 | other | downstream | 2564657 | 10995105 ~ 11007143 (-) | True | si:ch211-51e12.7 |
| TU335292 | other | upstream | 1600661 | 15174348 ~ 15177613 (-) | False | LOC113531972 |
| TU336422 | other | upstream | 3384837 | 16958524 ~ 16964887 (-) | True | phf21b |
| trnar-ccg_5 | other | upstream | 3529878 | 17103565 ~ 17103637 (-) | True | trnar-ccg_5 |
| TU337036 | other | upstream | 4405098 | 17978785 ~ 17980246 (-) | False | LOC113532261 |
| TU337037 | other | upstream | 4405098 | 17978785 ~ 17980246 (-) | False | LOC113532261 |
