RNA id: TU334694


Basic Information

Item Value
RNA id TU334694
length 201
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G282404
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 14332932 ~ 14333132 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacgagctcgtcgtcttctaattagcagctgaaataggcaaatgttaagtctgctttttaaaacgaaaaaaagaagcaatggcaagagagtggctgctagtatctgcgtgttggaacggctggaaacgtgtaatcgtgcactgtgcgcatgtcagaagattctgtcatgtaaacgcgcatatcaacccgattactttattc

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334657 lncRNA downstream 363035 13953999 ~ 13969897 (-) False G282368
TU334658 lncRNA downstream 363035 13968523 ~ 13969897 (-) True G282368
TU334636 lncRNA downstream 395053 13937656 ~ 13937879 (-) True G282349
TU334567 lncRNA downstream 492338 13838658 ~ 13840594 (-) True G282283
TU334559 lncRNA downstream 495501 13833248 ~ 13837431 (-) True G282279
TU334699 lncRNA upstream 39599 14372731 ~ 14373513 (-) True G282409
TU334700 lncRNA upstream 56691 14389823 ~ 14390557 (-) True G282410
TU334974 lncRNA upstream 381913 14715045 ~ 14731004 (-) False G282649
TU334971 lncRNA upstream 388677 14721809 ~ 14731004 (-) True G282649
TU334999 lncRNA upstream 406084 14739216 ~ 14739437 (-) True G282673
XM_026923243.2 mRNA downstream 474259 13851543 ~ 13858673 (-) True kin
XM_026922586.2 mRNA downstream 503424 13808409 ~ 13829508 (-) True LOC113531720
XM_026923772.2 mRNA downstream 545498 13782762 ~ 13787434 (-) True LOC113532385
XM_034313141.1 mRNA downstream 569142 13751523 ~ 13763790 (-) True LOC117599536
XM_034313246.1 mRNA downstream 608303 13665323 ~ 13724629 (-) False sfmbt2
XM_034313070.1 mRNA upstream 540718 14873850 ~ 14885572 (-) False LOC113531970
XM_026922975.2 mRNA upstream 540719 14873851 ~ 14885572 (-) True LOC113531970
XM_026922976.2 mRNA upstream 699516 15032648 ~ 15047471 (-) True slc6a1l
XM_034313261.1 mRNA upstream 726380 15059512 ~ 15078787 (-) False LOC113531968
XM_034313260.1 mRNA upstream 726380 15059512 ~ 15078785 (-) True LOC113531968
XR_003403346.2 other downstream 1751869 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 2672605 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 2744908 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 3073540 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 3325789 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 841216 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 2625392 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 2770433 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 3645653 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 3645653 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile